Draft: This Pull-Request is currently awaiting the following changes:
Fix minor issues from cosmetical refactor since fully functional commit 0af7f237bc7801138f2ce7acdd5f69b85cd43a6b (until then please check out 0af7f237bc7801138f2ce7acdd5f69b85cd43a6b to test functionality)
Improve handling of verbosity levels.
Create a separate class for parsing and validating command line options and positional arguments.
_Improve misleading naming of msaWriter methods write_timeslice and write_timeslice_component_
Improve validation checks.
Improve some descriptions.
Consider using TimesliceAnalyser and/or TimesliceDebugger.
This Pull-Request contains an initial implementation of the tool tsa2msa:
The tsa2msa tool is a command line utility designed to convert .tsa files to .msa files. Its primary purpose is to facilitate the creation of golden tests for the FLESnet application by converting output data from past runs that processed real experimental data. (tsa2msa --help)
Please see the main page of the tsa2msa doxygen documentation for futher information.
Draft: This Pull-Request is currently awaiting the following changes:
msaWritermethodswrite_timesliceandwrite_timeslice_component_This Pull-Request contains an initial implementation of the tool
tsa2msa:Please see the main page of the tsa2msa doxygen documentation for futher information.