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ccdmb
/
predector
Effector prediction pipeline based on protein properties.
Apache License 2.0
11
stars
7
forks
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FEATURE REQUEST: signalP6.0 support
#43
xizhesun
closed
3 years ago
5
effectorp3.0 support
#42
xizhesun
closed
3 years ago
4
FEATURE REQUEST: Sanitise PHI-base input
#41
darcyabjones
closed
3 years ago
2
BUG: active_site.dat.gz not downloadable anymore
#40
JWDebler
closed
3 years ago
10
BUG: deepsig error
#39
JWDebler
closed
3 years ago
2
FEATURE REQUEST: Add support for Effectorp3
#38
darcyabjones
closed
3 years ago
1
FEATURE REQUEST: Incorporate deepredeff into pipeline
#37
darcyabjones
closed
3 years ago
2
BUG: docker (long install) test fails
#36
JWDebler
closed
4 years ago
4
BUG: conda test crashes
#35
JWDebler
closed
4 years ago
4
BUG: Singularity build fails
#34
JWDebler
closed
4 years ago
9
BUG: docker build crashes
#33
JWDebler
closed
4 years ago
2
Add check for filename uniqueness
#32
darcyabjones
closed
4 years ago
1
BUG: Theano (deeploc) heaps of stuff writes to ~/.theano
#31
darcyabjones
closed
4 years ago
1
BUG: SignalP3-NN fails for long sequences.
#30
darcyabjones
closed
4 years ago
1
Add check for WSL to install.sh
#29
darcyabjones
opened
4 years ago
0
Add example command to run tests for install.sh
#28
darcyabjones
closed
3 years ago
1
Look into automatically downloading PHIbase
#27
darcyabjones
closed
3 years ago
1
Extract information from PHI-Base matches
#26
darcyabjones
closed
4 years ago
1
New docs section: configuring nextflow and running on supercomputers.
#25
darcyabjones
opened
4 years ago
0
New docs section: Extended intallation information
#24
darcyabjones
closed
4 years ago
2
New documentation page: Pipeline output.
#23
darcyabjones
closed
4 years ago
1
Implement effector classification, clustering, and ranking strategy
#22
darcyabjones
closed
4 years ago
3
Add a wrapper script for building the environment
#21
darcyabjones
closed
4 years ago
1
Conda register scripts should report proper errors if they fail.
#20
darcyabjones
opened
4 years ago
0
Dsl2
#19
darcyabjones
closed
4 years ago
0
Slight tidyup of James' commit
#18
darcyabjones
closed
4 years ago
0
dockerfiles for disulfinder modeller profbval
#17
linarozano
closed
5 years ago
0
James 001
#16
darcyabjones
closed
5 years ago
0
Darcy main
#15
darcyabjones
closed
5 years ago
0
Darcy main
#14
darcyabjones
closed
5 years ago
0
added hmmer container and pfam subset for testing
#13
darcyabjones
closed
5 years ago
0
Test1
#12
linarozano
closed
5 years ago
0
Config
#11
darcyabjones
closed
5 years ago
0
Config
#10
darcyabjones
closed
5 years ago
0
Test1
#9
linarozano
closed
5 years ago
0
added docker sudo profile
#8
darcyabjones
closed
5 years ago
0
added basic template config based on nfcore
#7
darcyabjones
closed
5 years ago
0
Containers
#6
darcyabjones
closed
5 years ago
0
typos and testing git from command line
#5
JWDebler
closed
5 years ago
0
Special branch
#4
darcyabjones
closed
5 years ago
0
blah
#3
darcyabjones
closed
5 years ago
0
spelling
#2
darcyabjones
closed
5 years ago
0
Update README.md
#1
JWDebler
closed
5 years ago
0
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