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cdanielmachado / carveme

CarveMe: genome-scale metabolic model reconstruction
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GPR universe #165

Closed arianccbasile closed 2 years ago

arianccbasile commented 2 years ago

Hi Daniel :) I was wondering if there is a script (probably in reframed?) to convert the gpr column in the file named "model_specific_data.csv" to the form in "bigg_gprs.csv.gz" both present in data/generated subfolder.

Best, Arianna

cdanielmachado commented 2 years ago

Hi Arianna,

I think this is what you are looking for:

https://github.com/cdanielmachado/carveme/blob/e5a5649dc7b469b3208f0723e2f84fdd2a45f573/carveme/universe/download.py#L194

:)

arianccbasile commented 2 years ago

It is, probably! Thank you Daniel :)