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centre-for-microbiome-research / GroopM

Metagenomic binning suite
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Error using groopm explore #26

Open ghost opened 7 years ago

ghost commented 7 years ago

Hey! I'm running GroopM 0.3.5. I have run parse and core without errors for my data set ( 39357 contigs, 96 BAM-files). However, I get an error when running groopm explore (also for allcontigs). Does my data include too many samples? Thanks for any feedback!

Unexpected error: <type 'exceptions.IndexError'> Traceback (most recent call last): File "/home/user/miniconda3/envs/groopm_env/bin/groopm", line 421, in GM_parser.parseOptions(args) File "/home/user/.local/lib/python2.7/site-packages/groopm/groopm.py", line 286, in parseOptions BE.plotContigs(timer, coreCut=options.cutoff, all=True) File "/home/user/.local/lib/python2.7/site-packages/groopm/groopmUtils.py", line 568, in plotContigs self.PM.plotAll(timer, coreCut, transform=self.transform, ignoreContigLengths=self.ignoreContigLengths) File "/home/user/.local/lib/python2.7/site-packages/groopm/profileManager.py", line 680, in plotAll self.plotStoitNames(ax1) File "/home/user/.local/lib/python2.7/site-packages/groopm/profileManager.py", line 605, in plotStoitNames self.stoitColNames[outer_index], IndexError: index 39 is out of bounds for axis 0 with size 39