cerebis / qc3C

Reference-free quality assessment for Hi-C sequencing data
GNU Affero General Public License v3.0
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Validate mapping minimum quality limit with other mapping tools. #52

Open cerebis opened 3 years ago

cerebis commented 3 years ago

It has been pointed out that a default limit of 60 may cause unintended results with mappers besides BWA.

We must validate the use of qc3C using other common tools such as bowtie.

One possibility is that this default is dynamically set based on the maximum reportable quality for a given tool.

This must be tested prior to resolving.