Run doc formatter

[bzah]

Pull Request to resolve #xxx

• [ ] Unit tests cover the changes.
• [ ] These changes were tested on real data.
• [ ] The relevant documentation has been added or updated.
• [ ] A short description of the changes has been added to doc/source/references/release_notes.rst.

Describe the changes you made

Unfortunately rstfmt is not well maintained and some directives are not supported. This means we need to manually comment unknown directives, run the formatter and uncomment them. This is only suited for a one time formatting as I did here.

[github-actions[bot]]

Report

File	Stmts	Miss	Cover	Missing
/opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages/icclim
_generated_api.py	178	9	95%	17–27
icclim_logger.py	85	29	66%	24, 43, 65, 70–95, 105, 111–142, 150–155
icclim_types.py	13	13	0%	1–21
main.py	283	34	88%	59–65, 125, 134, 415–419, 502, 528–529, 531–532, 534, 536–537, 539–540, 560–567, 637–642, 727, 734, 738–739
utils.py	40	8	80%	14–15, 25–30, 37–41, 43–44
/opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages/icclim/ecad
xclim_binding.py	52	8	85%	16–18, 45, 49, 78, 82, 111, 115
/opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages/icclim/generic_indices
generic_indicators.py	498	98	80%	49–55, 68, 72, 89, 93, 97, 110–113, 117, 191, 333–337, 339–343, 389, 420–421, 723–724, 759, 765, 773–774, 794, 958–962, 964–965, 983–989, 993, 1021, 1023, 1091–1092, 1125–1151, 1179–1199, 1215, 1224–1225, 1252–1284, 1290–1293, 1315
standard_variable.py	48	1	98%	19
threshold.py	411	34	92%	49–54, 210–211, 233, 237, 285, 301–303, 318–322, 326–330, 410, 552–553, 616–621, 716–717, 912, 935–936, 941, 1015–1016, 1019–1023, 1111–1113
/opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages/icclim/models
cf_calendar.py	35	1	97%	20
climate_variable.py	106	21	80%	27–34, 107–113, 168–169, 178, 214–218, 221, 261, 265–269, 296–297, 334
frequency.py	180	15	92%	36–38, 174–177, 321–327, 331, 414–418, 440, 445
global_metadata.py	6	6	0%	1–9
index_config.py	27	5	81%	7–11
index_group.py	35	2	94%	33–37
logical_link.py	21	1	95%	12
operator.py	31	3	90%	10, 15–19
standard_index.py	30	6	80%	7–10, 59, 62, 66
user_index_dict.py	20	20	0%	1–28
/opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages/icclim/pre_processing
in_file_dictionary.py	8	8	0%	1–29
input_parsing.py	205	53	74%	22–28, 81–82, 86–87, 92–97, 111–112, 178, 183–187, 190, 200–201, 212–216, 242, 256, 270, 291–296, 300, 302, 310–315, 320–325, 336–337, 351–358, 369–389, 428
rechunk.py	89	6	93%	21–22, 43–44, 48, 137
TOTAL	2643	381	86%

Test results

Tests	Skipped	Failures	Errors	Time
189	0 :zzz:	0 :x:	0 :fire:	1m 32s :stopwatch: