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cgat-developers
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cgat-apps
cgat-apps repository
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removed tests from setup.py because they are likely causing an issue …
#128
Acribbs
closed
3 months ago
0
reversted setup.py changes
#127
Acribbs
closed
3 months ago
0
modified github action yml
#126
Acribbs
closed
3 months ago
0
Ac removered
#125
Acribbs
closed
3 months ago
0
deprication of Blat and gff2psl
#124
Acribbs
closed
3 months ago
0
Ac bumppy10
#123
Acribbs
closed
3 months ago
0
Ac refactor
#122
Acribbs
closed
3 months ago
11
readthedocs security update as per pull request 118
#121
Acribbs
closed
3 months ago
0
added fixes suggested by pull req 114
#120
Acribbs
closed
3 months ago
0
Ac updates
#119
Acribbs
closed
3 months ago
0
Bump readthedocs-sphinx-search from 0.1.0rc3 to 0.3.2 in /doc
#118
dependabot[bot]
closed
3 months ago
2
bed2fasta - extend_by doesn't work
#117
Vandelost
opened
1 year ago
0
Update fasta2fasta.py
#116
IanSudbery
closed
2 years ago
6
Wrong columns in `--sanitize="ucsc" --assembly-report=FILE`?
#115
IanSudbery
opened
2 years ago
0
Remove debug statement in index_fasta
#114
IanSudbery
closed
3 months ago
3
Debugging print statement left in
#113
IanSudbery
closed
3 months ago
2
libcalignmentfile cimports
#112
jscaber
closed
2 years ago
0
change cimports
#111
Acribbs
opened
2 years ago
0
updated bamtools to reflect changes to pysam
#110
Acribbs
closed
2 years ago
0
bam2stats error - AttributeError: module 'pysam.libcalignmentfile' has no attribute 'PileupColumn'
#109
lucygarner
closed
2 years ago
11
reverted back to old setup.py
#108
Acribbs
closed
2 years ago
0
biopython now acceptes latest version
#107
Acribbs
closed
2 years ago
0
Ac read
#106
Acribbs
closed
2 years ago
0
modified conda readthedocs
#105
Acribbs
closed
2 years ago
0
reverst to conda and python readthedocs
#104
Acribbs
closed
2 years ago
0
forgot pysam dep
#103
Acribbs
closed
2 years ago
0
Ac docupdate
#102
Acribbs
closed
2 years ago
0
Ac docupdate
#101
Acribbs
closed
2 years ago
0
updated readthedocs yaml
#100
Acribbs
closed
2 years ago
0
moved readthedocs to conda env
#99
Acribbs
closed
2 years ago
0
added deps for cgat
#98
Acribbs
closed
2 years ago
0
trying to get scripts to render
#97
Acribbs
closed
2 years ago
0
Ac docupdate
#96
Acribbs
closed
2 years ago
0
Ac docs
#95
Acribbs
closed
2 years ago
0
removed version from docs
#94
Acribbs
closed
2 years ago
0
added cgat as a requirement for readthedocs
#93
Acribbs
closed
2 years ago
0
doc changes
#92
Acribbs
closed
2 years ago
0
Ac docs
#91
Acribbs
closed
2 years ago
0
imported version correctly
#90
Acribbs
closed
2 years ago
0
update conf.py to get docs to build on read the docs
#89
Acribbs
closed
2 years ago
0
Support latest pysam version
#88
Acribbs
closed
2 years ago
1
trying to get tests to work with osx build. Have added pip and remove…
#87
Acribbs
closed
2 years ago
0
Ac refactor
#86
Acribbs
closed
2 years ago
0
Ac requirements
#85
Acribbs
closed
3 years ago
1
added test for commandline
#84
Acribbs
closed
3 years ago
0
[bed2fasta]: Use of `--use-strand` and `--output-mode=segments` together gives incorrect result.
#83
IanSudbery
opened
3 years ago
0
Error with cgat bam2stats (ImportError: libhts.so.2: cannot open shared object file: No such file or directory)
#82
lucygarner
closed
3 years ago
3
updated fasta2bed to fix ungapped
#81
Acribbs
closed
3 years ago
0
Ac githubactions
#80
Acribbs
closed
3 years ago
4
Changed documentation to escape % in docstring
#79
IanSudbery
closed
3 years ago
3
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