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cgroza / GraffiTE

GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.
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The need to gzipped files #3

Closed Tcvalenzuela closed 2 years ago

Tcvalenzuela commented 2 years ago

Hi

It would be awesome if you can use the reads in a zipped version

cgroza commented 2 years ago

The pangenie step now uncompresses the reads if they are compressed (gzip).