I've been running into some issues when running multiple folds in parallel some of them fail with this error. Any ideas what I might try? it seems to not do this when running multipel
Traceback (most recent call last):
File "/aian/scripts/Chai/run_chai.py", line 25, in <module>
output_paths = run_inference(
^^^^^^^^^^^^^^
File "/software/envs/chai/lib/python3.11/site-packages/torch/utils/_contextlib.py", line 115, in decorate_context
return func(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/software/envs/chai/lib/python3.11/site-packages/chai_lab/chai1.py", line 271, in run_inference
chains = load_chains_from_raw(fasta_inputs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/software/envs/chai/lib/python3.11/site-packages/chai_lab/data/dataset/inference_dataset.py", line 164, in load_chains_from_raw
conformer_generator = RefConformerGenerator()
^^^^^^^^^^^^^^^^^^^^^^^
File "/software/envs/chai/lib/python3.11/site-packages/chai_lab/data/sources/rdkit.py", line 58, in __init__
conformers_cache_file = paths.cached_conformers.get_path().as_posix()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/software/envs/chai/lib/python3.11/site-packages/chai_lab/utils/paths.py", line 51, in get_path
download(self.url, path=self.path)
File "/software/envs/chai/lib/python3.11/site-packages/chai_lab/utils/paths.py", line 39, in download
tmp_path.rename(path)
File "/software/envs/chai/lib/python3.11/pathlib.py", line 1175, in rename
os.rename(self, target)
FileNotFoundError: [Errno 2] No such file or directory: '/software/envs/chai/lib/python3.11/site-packages/downloads/conformers_v1.download_tmp' -> '/software/envs/chai/lib/python3.11/site-packages/downloads/conformers_v1.apkl'
Hi! Truly truly amazing release. Congratulations!
I've been running into some issues when running multiple folds in parallel some of them fail with this error. Any ideas what I might try? it seems to not do this when running multipel