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chanzuckerberg / cellxgene-census

CZ CELLxGENE Discover Census
https://chanzuckerberg.github.io/cellxgene-census/
MIT License
88 stars 22 forks source link

problems in installation #1316

Closed inestm28 closed 1 week ago

inestm28 commented 1 week ago

I've been trying to install the Census Python API in many different ways, but it's not working... I've tried:

conda create -n census_env python=3.10
conda activate census_env
pip install cellxgene-census

it gives me this error:

Building wheels for collected packages: cellxgene-census, tiledbsoma
  Building wheel for cellxgene-census (pyproject.toml) ... done
  Created wheel for cellxgene-census: filename=cellxgene_census-1.16.3.dev6+gf32c274-py3-none-any.whl size=55372 sha256=ac74156ec060b4a8a8cabaccc65244ceb60166bfe77e16741e4ada6faf09182c
  Stored in directory: C:\Users\...\AppData\Local\Temp\pip-ephem-wheel-cache-309oa4d5\wheels\d5\17\b9\5b506cee790cba12fabd61255c7a54a6893138f32844b0d598
  Building wheel for tiledbsoma (pyproject.toml) ... error
  error: subprocess-exited-with-error

  × Building wheel for tiledbsoma (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [5 lines of output]
      running bdist_wheel
      Checking: C:\Users\...\AppData\Local\Temp\pip-install-ax31utra\tiledbsoma_e9e33789007a40f1b53eed4b589098d8\dist_links\dist\lib\tiledbsoma.dll exists: False
      Checking: C:\Users\...\AppData\Local\Temp\pip-install-ax31utra\tiledbsoma_e9e33789007a40f1b53eed4b589098d8\dist_links\dist\bin\tiledbsoma.dll exists: False
      Could not find module 'tiledbsoma.dll' (or one of its dependencies). Try using the full path with constructor syntax.
      error: [WinError 2] The system cannot find the file specified
      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for tiledbsoma
Successfully built cellxgene-census
Failed to build tiledbsoma
ERROR: ERROR: Failed to build installable wheels for some pyproject.toml based projects (tiledbsoma)

(I deleted my username only for this post) the installation is not working...

ebezzi commented 1 week ago

Hey @inestm28, unfortunately the Census is only supported on Linux and Mac OS, as specified here. You can try to WSL, although that has never been tested, to the best of my knowledge.

inestm28 commented 1 week ago

Thank you very much for your reply! I totally missed that sentence! Sorry for the email! Best wishes, Inês

On Tue, 19 Nov 2024 at 19:28, Emanuele Bezzi @.***> wrote:

Hey @inestm28 https://github.com/inestm28, unfortunately the Census is only supported on Linux and Mac OS, as specified here https://chanzuckerberg.github.io/cellxgene-census/cellxgene_census_docsite_installation.html. You can try to WSL, although that has never been tested, to the best of my knowledge.

— Reply to this email directly, view it on GitHub https://github.com/chanzuckerberg/cellxgene-census/issues/1316#issuecomment-2486448597, or unsubscribe https://github.com/notifications/unsubscribe-auth/ARQTMMK6Z4I4RUGXOPECGML2BN7LRAVCNFSM6AAAAABSCLDDVKVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDIOBWGQ2DQNJZG4 . You are receiving this because you were mentioned.Message ID: @.***>