search

chaolinzhanglab / czplib

Chaolin Zhang lab perl library
GNU General Public License v3.0
5 stars 7 forks source link

Can't locate Bio/SeqIO.pm #4

Open DMHe98 opened 2 years ago

DMHe98 commented 2 years ago

$ getMutationType.pl -h Can't locate Bio/SeqIO.pm in @INC (@INC contains: /public/home/dmhe_gibh/soft/czplib /public/home/dmhe_gibh/perl5/lib/perl5/x86_64-linux-thread-multi /public/home/dmhe_gibh/perl5/lib/perl5 /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 .) at /public/home/dmhe_gibh/soft/czplib/Sequence.pm line 19. BEGIN failed--compilation aborted at /public/home/dmhe_gibh/soft/czplib/Sequence.pm line 19. Compilation failed in require at /public/home/dmhe_gibh/soft/CTK/getMutationType.pl line 9. BEGIN failed--compilation aborted at /public/home/dmhe_gibh/soft/CTK/getMutationType.pl line 9.

suvrajitm commented 2 years ago

Hello, it seems like you are not running the command within the CTK conda environment. Once you properly install CTK via anaconda, you should be able to just run the command "getMutationType.pl" , it will show you the function arguments etc. Please follow the CTK installation procedure: https://zhanglab.c2b2.columbia.edu/index.php/CTK_Documentation#Installation