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chapmanb / cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
http://cloudbiolinux.org
MIT License
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Add new htslib1.11 environment with SCRAMble package #369

Closed hackdna closed 2 years ago

hackdna commented 3 years ago

Toward https://github.com/bcbio/bcbio-nextgen/issues/3244.

This works even without SCRAMble package in Bioconda but should probably be merged once the package is added just to be on the safe side (https://github.com/bcbio/bioconda-recipes/tree/scramble-recipe/recipes/scramble).

hackdna commented 3 years ago

SCRAMble package for Conda has been published (https://anaconda.org/bioconda/scramble/), so this PR can be merged now.

naumenko-sa commented 2 years ago

This was implemented: https://github.com/chapmanb/cloudbiolinux/blob/master/contrib/flavor/ngs_pipeline_minimal/packages-conda.yaml#L304