Open wbvguo opened 2 years ago
Same problem……Any help?
I compiled BitmapperBS under various conditons and still ended with "Illegal instruction (core dumped)". Conda installed version has the same error. The only working version is the docker version. I do not know the difference between my system and docker, but there must be something that causes the error. For your information.
Still the same problem…… 2024.
Still the same problem…… 2024.
I downgraded the version to 1.0.2.1-hc088db4_0 and the problem disappeared......
Dear BitmapperBS developer,
I installed the latest bitmapperBS (v1.0.2.3) by git clone the source code and make (GCC version 9.4.0), the installation works well, I can see bitmapperBS and psascan in the folder. The genome indexing part is also good, with the following message:
But the alignment runs into trouble (Segmentation fault (core dumped)):
I also tried the install and run it with conda, the installation is good, but also run into the following error.
I tested all above on a server running on ubuntu system (20.04) that supports sse4_2. I also tested on another cluster node running on centos 7, which supports AVX2, it has the same alignment issue.
May I ask if you have any idea to make it work?
Thanks!