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chhylp123
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hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
MIT License
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Feature request: Separate hifiasm into stages
#608
SHuang-Broad
opened
7 months ago
10
hifiasm issue with tetraploid genome assembly
#607
RezwanCAAS
opened
7 months ago
4
Segfault when incorporating HiC data
#606
jeramiahsmith
opened
8 months ago
1
adapterLen mismatch
#605
wharvey31
opened
8 months ago
1
low assembly metrics for certain hifi read sets (compared to nextdenovo)
#604
chklopp
closed
8 months ago
1
Enable building on non-SSE platforms
#603
StuartAbercrombie
opened
8 months ago
0
high memory usage when using hi-c phasing but not with trio binning
#602
ethan-baldwin
opened
8 months ago
10
Large Unitigs Size in Phased Assembly of Hexaploid
#601
dozhun
opened
8 months ago
0
No output files, no errors
#600
callenhyland
opened
8 months ago
0
--dual-scaf
#599
tallnuttrbgv
opened
8 months ago
2
More checkpoints
#598
mictadlo
opened
8 months ago
1
Obtaining phase sets
#597
regevs
opened
8 months ago
0
Questions about L, A, S -Lines in GFA format.
#596
zhaotao1987
opened
8 months ago
6
output files empty
#595
kathbarros
opened
8 months ago
4
The REVIO data by hifiasm!
#594
zhangwenda0518
closed
8 months ago
1
Please clarify scaffolding with HiC
#593
tallnuttrbgv
opened
8 months ago
2
Out of memory while assembling a polyploid phased assembly
#592
pashapu43
opened
8 months ago
1
Benchmark of long reads mapper using A-lines
#591
Wenfei-Xian
closed
8 months ago
2
crushed k-mer graph
#590
yurunxian
closed
8 months ago
2
Issues with assembly - low coverage?
#589
mbeavitt-bh
closed
8 months ago
4
GFA to FASTA conversion issue
#588
arslan9732
opened
8 months ago
0
A super-long contig, including a region with zero mapping depth (only HiFi reads)
#587
HouYan20
opened
9 months ago
0
Question about Hifiasm algorithm
#586
cjain7
opened
9 months ago
2
Which of the two haplotypes is from the parent and which is from the mother? Do the two haplotypes need to remove haplotypic duplication?
#585
aijigekoukou-shen
closed
8 months ago
2
Hifiasm with Pacbio Ultra-low DNA input sequencing data out put assembly with High duplication level of BUSCO score in Hi-C mode
#584
Neo-xbx-00
closed
9 months ago
2
corn dump
#583
lzux
opened
9 months ago
0
After adjusting the parameters based on the information from the Hifiasm.log file, the issue of "phased assembly is much larger than the estimated genome size" still persists.
#582
xujialupaoli
opened
9 months ago
1
Duplicated BUSCO for polyploid genome
#581
Phytoecia
opened
9 months ago
3
ERROR6 and others probably no warning
#580
schellt
opened
9 months ago
6
Inquiry Regarding Genome Assembly with ONT Data: Quality Comparisons and Recommendations
#579
Bank-tidy
opened
9 months ago
3
The influence of depth to the assembly
#578
xuxingyubio
opened
9 months ago
8
Missing CHM13-HiFi.fa.gz file
#577
marcusgaspar
opened
9 months ago
0
Two hap are larger than survey and flow cytometry result
#576
zhang144999
opened
9 months ago
1
Is such a k-mer plot normal?
#575
YanCheer
opened
9 months ago
2
High BUSCO missing rate
#574
shehongbing
closed
9 months ago
1
hifiasm for only ONT reads
#573
cahuparo
opened
9 months ago
2
Hi-C mode about the allotetraploid
#572
twdawd
opened
9 months ago
2
Tetraploid assembly results Which one should I use?
#571
moxphil
opened
9 months ago
7
Hi-C +HiFi sequencing run killed?
#570
mabh5
opened
10 months ago
11
Trio mode: hybrid in HIFI + parents in Illumina, resulting in assemblies with high duplication levels
#569
carolhsb
opened
10 months ago
6
Genome size still too large after using "-s" parameter
#568
qdu-beep
opened
10 months ago
0
Assertion `((*q0l) == (*q1l)) && ((*t0l) == (*t1l)) && (err0 == err1)' failed
#567
erfrancoeur
opened
10 months ago
8
Partition - Segmentation fault
#566
jlipovac
opened
10 months ago
2
different memory usage at different purge levels
#565
AlcaArctica
opened
10 months ago
1
Homozygous diploid trio assembly assigning largely ambiguous nodes to only one haplotype
#564
ASLeonard
opened
10 months ago
10
Does het_peak=-1 have any effect on assembly?
#563
xuzhougeng
closed
10 months ago
3
Reassign the chromosomes from two Hi-C phased assemblies
#562
tinyfallen
opened
10 months ago
0
Length filtering input dataset
#561
kokyriakidis
opened
10 months ago
1
PAF overlaps format
#560
diego-rt
closed
10 months ago
2
Error in void recalcate_window_advance
#559
kokyriakidis
closed
10 months ago
4
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