choderalab openmmtools issues

choderalab / openmmtools

A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.

http://openmmtools.readthedocs.io

MIT License

252 stars 81 forks source link

issues

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add release notes + missing package needed for testing

#760 mikemhenry closed 4 days ago
1
Potential Data Inconsistency in MultiStateSampler:equilibrate

#759 manglav opened 2 weeks ago
1
add entropy/enthalpy support for pymbar4

#758 schuhmc opened 3 weeks ago
8
get_entropy() and get_enthalpy() does not work with pymbar4

#757 schuhmc opened 3 weeks ago
0
Replica exchange method with AMOEBA force field and a customIntegrator

#756 yongyouhe opened 4 weeks ago
0
Solvation free energy calculation issues

#755 SHervoe-Hansen opened 1 month ago
0
A question about how to read the *.nc file from a REMD simulation when the job is running or if the job is killed

#754 xiaowei-xie2 opened 1 month ago
1
add HIP platform to openmmtools

#753 mikemhenry closed 1 week ago
4
`test_storage_reporter_and_string` test segfaults sometimes

#752 mikemhenry opened 1 month ago
0
Fix 2 more tests that fail sometimes in CI

#751 mikemhenry closed 1 week ago
1
[DNM] Test if openmm 8.2 beta works

#750 mikemhenry closed 1 month ago
2
"Fix" flaky tests

#749 mikemhenry closed 1 month ago
1
Re-evaluate the slowness of slow tests

#748 ijpulidos opened 2 months ago
0
Define support policy for OpenMM versions

#747 ijpulidos opened 2 months ago
1
Update to PyTest (Rebased Edition)

#746 mikemhenry closed 2 months ago
1
Adding support for future OpenFF virtual site releases in AbsoluteAlchemicalFactory

#745 IAlibay opened 2 months ago
1
Use OMSF action for AWS self-hosted runner

#744 mikemhenry closed 2 months ago
1
Work with upstream to update to work with new SciPy Versions

#743 mikemhenry opened 3 months ago
2
WIP -- Migrate to pytest

#742 ijpulidos closed 2 months ago
1
Fix CI

#741 mikemhenry closed 2 months ago
21
exploding solvate when using the openmm-alchemy tools

#740 LeoFHall opened 3 months ago
0
HDF5 error while trying to read trajectories with 0.23.0 and 0.23.1

#739 slochower closed 2 months ago
11
[Question] How would one use MPI with the ReplicaExchangeSampler?

#738 dumbasaroc opened 4 months ago
3
[Questions] How to report to stdout while running ReplicaExchangeSampler

#737 4doom4 opened 4 months ago
2
Units of Thermostat Bead Velocity of Nose Hoover Verlet Integrator

#736 wlai0611 opened 4 months ago
0
[WIP] Using the robust solver for pyMBAR - avoiding convergence Failu…

#735 RiesBen closed 1 month ago
16
Difference between ParallelTempering and ReplicaExchangeSampler?

#734 amin-sagar opened 4 months ago
2
Problems with Exponentially distributed temperatures

#733 amin-sagar opened 5 months ago
2
ReplicaExchangeSampler failing silently on single A100 GPU when too many replicas are used

#732 k2o0r opened 5 months ago
1
multistatesampler issue during yank lysozyme example

#731 camattelaer opened 6 months ago
1
Hydration Free Energy with alchemlyb

#730 igordiy opened 6 months ago
2
Implementation of Girsanov reweighting in openmmtools integrator module

#729 anyschaefer opened 7 months ago
6
Add AMD HIP support

#728 mikemhenry opened 7 months ago
1
Permission issue about reporter

#727 hsv1472 closed 8 months ago
0
Multiple GPUs

#726 gitkol opened 8 months ago
9
Test pr

#725 mikemhenry closed 1 month ago
0
MetropolisMonteCarloIntegrator does not work when I apply steps over time.

#724 BlackPianoCat opened 9 months ago
0
ContextCache.get_context() takes forever to run

#723 AnthonyDavolio01 opened 10 months ago
1
Integrate hybrid topology factories into openmmtools

#722 ijpulidos opened 11 months ago
1
Create alchemy subpackage

#721 ijpulidos closed 1 year ago
3
Reference for openmmtools

#720 xiki-tempula opened 1 year ago
1
[Question] How to choose between SAMS & REMD

#719 yanze039 opened 1 year ago
0
Openmmtools without Jax?

#718 sef43 closed 1 year ago
3
[Question] How do I inspect the trajectories saved by MultiStateReporter?

#717 mkrompiec opened 1 year ago
3
Add `get_temperature()` and `set_temperature()` to our `LangevinIntegrator` base class

#716 mikemhenry closed 1 year ago
1
Should equilibration iterations and effective production iterations be integers?

#715 IAlibay opened 1 year ago
2
Drop older python version

#714 mikemhenry closed 1 year ago
5
Example for running REMD on multiple GPUs

#713 msuruzhon closed 1 year ago
6
MultiStateReporter variable pos/vel save frequency

#712 richardjgowers opened 1 year ago
14
Release notes for 0.23.1

#711 mikemhenry closed 1 year ago
0