choishingwan PRSice issues

choishingwan / PRSice

A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores

http://prsice.info

GNU General Public License v3.0

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issues

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PRSet: Question about Which Gene Set to Choose

#371 jueqiw opened 1 week ago
1
Problems with quantile plots

#370 Takashi-M891 opened 1 week ago
2
use PGS score files instead assoc files

#369 Janner125 opened 3 weeks ago
0
Error: No valid variant remaining

#368 ryshi06 opened 1 month ago
0
Error in PRSice execution: "Error in if (argv_c[[i]]) command = paste(command, " --", i, sep = "") : missing value where TRUE/FALSE needed"

#367 laiyongjie opened 1 month ago
0
Sumscore option yields float PRS

#366 wiegertj closed 1 month ago
2
Issue with PRSet Setting Threshold

#365 ciel1021 opened 3 months ago
0
Updates quick_start_prset.md to include PLoS Gen paper

#364 juditperala opened 3 months ago
0
Error: Invalid .bed file size for yyy_Chr2.QC.bed.

#363 acca1562 opened 3 months ago
3
Error: Invalid .bed file size for yyy_Chr2.QC.bed

#362 acca1562 closed 3 months ago
0
About the covariate file

#361 acca1562 opened 3 months ago
4
PRSice MAF and Filtering Step Slow

#360 zhanglucas opened 4 months ago
1
[Suggestions] support for pfile

#359 chenyangjjj closed 5 months ago
1
Generating polygenic scores without a target data phenotype

#358 JessG1981 opened 5 months ago
1
[support] replicable result on inidvidual level

#357 shawndocker-24 opened 6 months ago
1
Issue with PRSice-v2 output

#356 JessG1981 closed 7 months ago
3
Terminate called after throwing an instance of 'std::runtime_error'

#355 ahasuni opened 7 months ago
0
Error when inputing bgen files

#354 chenpunk closed 4 months ago
5
Error: Invalid .bed file size for .bed

#353 zfchen1 opened 8 months ago
4
Error: No valid variant remaining

#352 Shrishtee-kandoi opened 8 months ago
6
Empty Valid SNP ID

#351 science987 opened 9 months ago
0
Issue with the output files (.summary and .prsice files)

#350 WeiChenPan closed 9 months ago
1
INFO commands

#349 JihyunKiminGithub opened 10 months ago
1
Trying to run PRSice on files received by a collaborator but BGEN file is not being opened

#348 varsh19 opened 1 year ago
1
Set-based Clumping

#347 JinhanZhu1 closed 9 months ago
1
how to combine PRS from each chromosomes？

#346 hxckk closed 9 months ago
15
Reduce time

#345 SoumenMaity922 closed 1 year ago
2
Error can't open base file

#344 youniwerse closed 1 year ago
2
Unrecognized Option

#343 SoumenMaity922 closed 1 year ago
4
scores

#342 mfazel closed 1 year ago
1
[BUG]std::runtime_error when clumping

#341 jraikist opened 1 year ago
1
All the variants are excluded, No valid variants

#340 msarguru closed 1 year ago
2
PRSet Background file

#339 JinhanZhu1 closed 1 year ago
4
[BUG] `sys/sysctl.h` is deprecated in glibc-2.3.2

#338 espenhgn opened 1 year ago
2
Issue with covariate-file

#337 LarsOstman opened 1 year ago
6
Customize Base Dataset

#336 JinhanZhu1 closed 1 year ago
3
[Help Wanted]

#335 paulosaquilayan opened 1 year ago
0
[BUG]no error but .best and .summary file come out to be NULL data.frame

#334 yc-long closed 1 year ago
0
Unable to remove duplicated SNP with --extract PRSice.valid

#333 sakuramodokich closed 1 year ago
1
Issue with plotting: Graphics API version mismatch

#332 sakuramodokich closed 1 year ago
0
No error but getting no results

#331 sakuramodokich closed 1 year ago
4
Terminate Runtime Error

#330 michellekee closed 2 months ago
0
Too many variants with mismatch information

#329 sakuramodokich closed 1 year ago
0
Too many variants with mismatch information

#328 sakuramodokich closed 1 year ago
4
No error but getting no plot

#327 zillurbmb51 closed 9 months ago
3
Error: ZSTD compression currently unsupported

#326 sakuramodokich closed 1 year ago
6
Trying to run PRSice with Age and Sex as covariates but I get the error "ERROR: All samples removed due to missingness in covariates file"

#325 varsh19 closed 1 year ago
2
Why computing the R2 between the trait and the PRS is different from PRSIce results?

#324 Antonio-Nappi opened 1 year ago
5
How to use PRSice without a p-value (e.g data from PGSCatalog)

#323 frankMusacchia closed 1 year ago
2
Why PRSice-2 tries to install again './lib'?

#322 Antonio-Nappi closed 1 year ago
1