chongxi / spiketag

Next generation of spike sorting package for BMI
BSD 3-Clause "New" or "Revised" License
6 stars 4 forks source link

group bug in probe view #12

Closed chongxi closed 6 years ago

chongxi commented 6 years ago

image

chongxi commented 6 years ago

image

chongxi commented 6 years ago

That is because the order of electrodes in the view and grp_idx is different. Add edge finding:

    def grp_2_edges(self, grp_dict):
        _grp_idx = []
        for grp_id, grp in grp_dict.items():
            _grp = np.array([np.where(self.electrode_id==i)[0] for i in grp]).squeeze()
            _grp_idx.append(_grp)
            # print _grp
            if grp_id == 0:
                edges = np.array([i for i in comb(_grp, 2)])
            else:
                edges = np.vstack((edges, np.array([i for i in comb(_grp, 2)])))
        # print edges
        return edges, _grp_idx
self.edges, self.grp_idx = self.grp_2_edges(prb.grp_dict)

when selected:

    def select(self, group_id):
        if hasattr(self.prb, 'grp_dict'):
            self.electrode_edge.color[:] = np.ones((self.electrode_pos.shape[0], 4))*0.5
            self.electrode_edge.color[self.grp_idx[group_id],:] = np.array([1,0,0,0.5])
            self.update()
chongxi commented 5 years ago

github trello