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chopdgd
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bfx-tools-wdl
WDL tasks for commonly used BFX tools
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Rhel9 updates
#176
weixuanfu
closed
1 year ago
0
Rhel9 updates (#174)
#175
jaredgk
closed
1 year ago
0
Rhel9 updates
#174
jaredgk
closed
1 year ago
0
remove default queues from unix functions
#173
jaredgk
closed
1 year ago
0
add userString to penncnv detect CNV
#172
weixuanfu
closed
1 year ago
0
v1.8.0 release
#171
weixuanfu
closed
1 year ago
0
Tools upgrade for new pipelines
#170
weixuanfu
closed
1 year ago
0
Python2to3
#169
weixuanfu
closed
2 years ago
0
Add setkey option in gatk to avoid overwrite set from slivar
#168
weixuanfu
closed
3 years ago
0
Feature petagene
#167
weixuanfu
closed
3 years ago
0
Support petegene compressed fastq.gz file
#166
weixuanfu
closed
1 year ago
0
Feature rsync
#165
weixuanfu
closed
3 years ago
1
Add rsync and md5sum
#164
weixuanfu
closed
3 years ago
0
2021 spring release
#163
weixuanfu
closed
3 years ago
0
Slurm 157
#162
Tayazseven
closed
3 years ago
0
Disable M5 tag #160
#161
weixuanfu
closed
3 years ago
0
M5 info in BAM file from novoalign V5
#160
weixuanfu
closed
3 years ago
0
import updatre with the most recent novoalign settings
#159
Tayazseven
closed
3 years ago
0
Novoalign 156
#158
Tayazseven
closed
3 years ago
0
UGE to Slurm HPC migration
#157
Tayazseven
opened
3 years ago
0
Novoalign task update to make commandline userString modular
#156
Tayazseven
opened
3 years ago
0
BCFTools Sort task
#155
Tayazseven
closed
4 years ago
0
Penncnv update
#154
fullrobot
closed
4 years ago
0
Feature mosdepth
#153
Tayazseven
closed
4 years ago
0
no more padding on files
#152
Tayazseven
closed
4 years ago
1
Bedutils - no more bed file padding for variant call files and coverage files
#151
Tayazseven
closed
4 years ago
0
Memory bumped & snpeff annotation file name updated to '*annotated.raw*'
#150
Tayazseven
closed
4 years ago
0
Bump Memories for tools
#149
Tayazseven
closed
4 years ago
0
Feautre - New tool for Mosdepth depth calculation
#148
Tayazseven
closed
4 years ago
0
index for somatic & tumor sv files are set as output files
#147
Tayazseven
closed
4 years ago
0
Add index files for Manta
#146
Tayazseven
closed
4 years ago
0
output_filename_prefix fixed
#145
Tayazseven
closed
4 years ago
0
Hotfix on output_filename_prefix for Gsnap
#144
Tayazseven
closed
4 years ago
0
[140] Adds Penncnv wdl tasks
#143
fullrobot
closed
4 years ago
0
[141] pip path
#142
fullrobot
closed
4 years ago
0
pip path length breaks sometimes
#141
fullrobot
closed
4 years ago
0
Add PennCNV wdls
#140
fullrobot
closed
4 years ago
0
Resolves #138 - RNASeQC memory doubled (1 GB -> 2 GB)
#139
mark-welsh
closed
4 years ago
0
RNASeQC needs more memory... sometimes
#138
mark-welsh
closed
4 years ago
0
Fix novoalign for mito
#137
Tayazseven
closed
4 years ago
0
output_filename_prefix is needed for mito pipeline
#136
Tayazseven
closed
4 years ago
0
Fix haplochecker
#135
Tayazseven
closed
4 years ago
0
Feature 125 manta
#134
Tayazseven
closed
4 years ago
0
Create workflows for the GATK Best Practices
#133
mark-welsh
opened
4 years ago
0
New output parameter for GATK DepthOfCoverage
#132
mark-welsh
opened
4 years ago
0
Fix haplochecker typos & update haplogrep version
#131
Tayazseven
closed
4 years ago
0
Hotfix 128
#130
Tayazseven
closed
4 years ago
0
memory allocations on compute-intense tasks.
#129
Tayazseven
closed
4 years ago
0
HOTFIX - Memory issues for big EXOME bams
#128
Tayazseven
closed
4 years ago
0
output file names are now input variables
#127
Tayazseven
closed
4 years ago
0
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