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chrisquince / STRONG

Strain Resolution ON Graphs
MIT License
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Filter COGs against all bins not just MAGs #75

Closed chrisquince closed 4 years ago

chrisquince commented 4 years ago

When we check COG subgraphs for overlaps we only compare to other MAGs not all bins. This means that if the contaminating COG is not in a MAG we miss it. We should filter the MAG COGs by overlaps with all bins.

chrisquince commented 4 years ago

Although with the current method of detecting overlap this will require us to extract COG subgraphs for all bins so maybe better to do something where we thread the relevant COG ORFs instead?

chrisquince commented 4 years ago

OK this has now been implemented so closing.