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chrisquince
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STRONG
Strain Resolution ON Graphs
MIT License
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Need to remove replicate unitigs on cog graphs within bin
#34
chrisquince
opened
5 years ago
10
DESMAN does not appear to run
#33
chrisquince
closed
5 years ago
2
AD3 resolve different sequencing types
#32
chrisquince
closed
5 years ago
3
Bubbling out of core genes
#31
chrisquince
opened
5 years ago
1
Gene simplifier appears to be failing
#30
chrisquince
closed
5 years ago
6
Refactoring
#29
snurk
opened
5 years ago
3
Write-up
#28
snurk
opened
5 years ago
3
Rerun AD7 on the entire quality controlled dataset
#27
snurk
closed
5 years ago
2
Look at Meren's bin
#26
snurk
closed
5 years ago
15
Simplification fragments genes incorrectly
#25
chrisquince
closed
4 years ago
4
Graph simplification removes true paths on single genes
#24
chrisquince
closed
5 years ago
3
Apparently chimeric bins produced by merging process
#23
chrisquince
opened
5 years ago
2
Analyse published FMT
#22
chrisquince
opened
5 years ago
4
Graph extractor hanging
#21
chrisquince
closed
5 years ago
2
Does spades use the correct threads argument from config?
#20
chrisquince
closed
5 years ago
2
COG fragments appear to not be joined in graph
#19
chrisquince
closed
5 years ago
0
Diagram of overall pipeline
#18
chrisquince
closed
4 years ago
0
Improved bin validation
#17
chrisquince
closed
5 years ago
1
Add DESMAN to STRONG
#16
chrisquince
closed
5 years ago
3
Subsampling real assemblies to get coassemblies in reasonable time
#15
chrisquince
closed
5 years ago
2
Bin dereplication
#14
chrisquince
closed
5 years ago
2
Proper output checking and errors
#13
chrisquince
opened
5 years ago
0
Possible unitig mislabelling bug with new spades tools
#12
chrisquince
closed
5 years ago
2
Major issue with STRONG pipeline
#11
chrisquince
opened
5 years ago
4
Extractor hanging
#10
chrisquince
closed
5 years ago
2
Extract all versions of a COG independently from binning
#9
chrisquince
closed
5 years ago
7
Failure in Consensus.py
#8
snurk
closed
5 years ago
1
Spam in the console
#7
snurk
closed
5 years ago
1
Division by zero warning detected
#6
snurk
closed
5 years ago
1
Allow specifying some simplification parameters
#5
snurk
closed
5 years ago
3
Add spades mem to configs
#4
chrisquince
closed
5 years ago
1
Run strain analysis after all cog extraction is completed
#3
chrisquince
closed
5 years ago
1
Assembly parameters to the config
#2
snurk
closed
5 years ago
1
Using contigs rather than scaffholds
#1
chrisquince
closed
5 years ago
1
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