Rscript is not installed properly. - Githubissues

chung-lab / SCAFE

Single Cell Analysis of Five'Ends

MIT License

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Rscript is not installed properly. #24

Open yxsee opened 1 year ago

yxsee commented 1 year ago

Rscript version 4.3.0 fails all the Rscript checks in SCAFE.

Rscript --version
Rscript (R) version 4.3.0 (2023-04-21)

https://github.com/chung-lab/SCAFE/blob/90afd96279c51302ea31521622b468954cc54df7/scripts/scafe.tool.cm.filter#L716C2-L716C58

https://github.com/chung-lab/SCAFE/blob/90afd96279c51302ea31521622b468954cc54df7/scripts/scafe.tool.cm.annotate#L693C26-L693C26

sarahhp commented 8 months ago

I have also run into this problem. The Rscript version message has changed between Rv3 and 4. If R v4 works fine, could you suggest a fix ?