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claraqin / neonMicrobe

Processing NEON soil microbe marker gene sequence data into ASV tables.
GNU Lesser General Public License v3.0
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Sequence downloading functions should utilize neonUtilities::zipsByURI #17

Closed claraqin closed 3 years ago

claraqin commented 4 years ago

To create a more robust file downloading process, the downloadRawSequenceData function should use neonUtilities::zipsByURI instead of the base R function file.download. Since zipsByURI only accepts metadata from a downloaded file, this may also require changes to the default behavior of downloadSequenceMetadata.

lstanish commented 3 years ago

draft script using zipsByUri available called downloadRawSequenceData.R. Also submitted an issue/enhancement request for zipsByUri to take R objects as input to remove the requirement for local files to run.

claraqin commented 3 years ago

@lstanish addressed this on Dec 14, 2020.