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claraqin / neonMicrobe

Processing NEON soil microbe marker gene sequence data into ASV tables.
GNU Lesser General Public License v3.0
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Replace filename-parsing code with metadata-matching code in all vignettes #36

Closed claraqin closed 3 years ago

claraqin commented 3 years ago

Some of the vignettes contain code that looks like this:

unique_runs <- unique(unlist(
  regmatches(list.files(PATH_RAW), gregexpr("^run[A-Za-z0-9]*", list.files(PATH_RAW)))
))

Rather than parsing information from the filenames, we should parse them from associated metadata instead.

claraqin commented 3 years ago

Also closed by the pull request that merged the meta_reliant_utils branch.