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clemente-lab
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mmeds-meta
A database for storing and analyzing omics data
https://mmeds.org
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Improved summaries: correct recognition of dates as continuous variables
#422
adamcantor22
opened
2 years ago
1
Issue fix consistent validation
#421
adamcantor22
closed
2 years ago
1
Minor inconsistency bugs in validation and analysis
#420
adamcantor22
closed
2 years ago
0
Decide what data can be deleted and how
#419
adamcantor22
opened
2 years ago
5
Consistent Sequencing Run IDs
#418
adamcantor22
opened
2 years ago
0
Enhancement dump reload
#417
adamcantor22
closed
2 years ago
1
Ability to perform meta-analysis
#416
adamcantor22
closed
2 years ago
0
Bump numpy from 1.21.0 to 1.22.0
#415
dependabot[bot]
closed
2 years ago
2
Incorporate alpha/beta median/centroid calculations into analysis pipeline
#414
adamcantor22
opened
2 years ago
2
Parallelizing downstream analysis
#413
cleme
closed
2 years ago
2
Incorporate decontam into MMEDS
#412
cleme
opened
2 years ago
0
Enhancement analysis testing
#411
mstapylton
closed
2 years ago
3
Investigate features we don't understand
#410
adamcantor22
opened
2 years ago
1
Generalize handling and sanitization of user I/O
#409
adamcantor22
opened
2 years ago
0
Add confirmation to sending emails
#408
adamcantor22
opened
2 years ago
0
Re-introduce already-demultiplexed uploads and clarify upload types
#407
adamcantor22
opened
2 years ago
2
Make auto-submitting jobfiles more robust and customizable
#406
adamcantor22
opened
2 years ago
0
multiple file_index files at different levels within a study, not clear which MMEDs pulls info from
#405
mstapylton
opened
2 years ago
0
Improved summaries: many discrete variables in summaries causes very unclear colors
#404
adamcantor22
opened
2 years ago
0
Improved summaries: taxa summary legend strings that are too long get cutoff
#403
mstapylton
opened
2 years ago
0
Inconsistent legends for taxa summary barplot
#402
mstapylton
closed
2 years ago
1
Improved summaries: fix taxa bar plot legends
#401
adamcantor22
opened
2 years ago
1
Parallelize analysis sections
#400
adamcantor22
closed
4 months ago
3
File and Database Document Ownership Restructuring
#399
adamcantor22
opened
2 years ago
0
Rolling back analysis testing to working version
#398
mstapylton
closed
2 years ago
0
Enhancement study sequencing separation
#397
adamcantor22
closed
2 years ago
2
Revert "Bump numpy from 1.19.4 to 1.21.0"
#396
adamcantor22
closed
2 years ago
1
LEfSe and OTU upload tabs are dummies
#395
adamcantor22
opened
2 years ago
3
Bump numpy from 1.19.4 to 1.21.0
#394
dependabot[bot]
closed
2 years ago
1
Upload HMP data to MMEDS
#393
cleme
opened
2 years ago
0
Reinforce Automated Testing
#392
adamcantor22
opened
2 years ago
0
The future of summaries
#391
cleme
opened
2 years ago
4
MMEDs analysis requires at least one metadata column
#390
mstapylton
opened
2 years ago
5
Analysis config only accepts metadata from specimen file
#389
mstapylton
closed
1 year ago
4
Add Helpful Descriptions to web pages
#388
adamcantor22
opened
2 years ago
0
Enhancement variable abundance plot
#387
adamcantor22
closed
2 years ago
1
Re-evaluate structure of MMEDS analysis pipeline (specifically ANCOM)
#386
adamcantor22
closed
4 months ago
4
MMEDS Data Restructuring
#385
adamcantor22
closed
2 years ago
22
Analysis type should default to dada2
#384
mstapylton
closed
2 years ago
3
Enhancement analysis testing
#383
mstapylton
closed
2 years ago
1
Move to GreenGenes2 for Taxonomic reference
#382
cleme
opened
2 years ago
3
Add Batch Correction
#381
adamcantor22
opened
2 years ago
0
Bump pillow from 8.3.2 to 9.0.1
#380
dependabot[bot]
closed
2 years ago
3
Check metadata for allowed values
#379
adamcantor22
opened
2 years ago
2
Add DMM analysis to MMEDS
#378
cleme
opened
2 years ago
0
Add time period variable functionality
#377
adamcantor22
opened
2 years ago
1
Dual barcode metadata not adequately checked
#376
adamcantor22
closed
2 years ago
0
Long uploads may error out
#375
adamcantor22
opened
2 years ago
4
Enhancement more robust UI
#374
adamcantor22
closed
2 years ago
1
Bump pillow from 8.3.2 to 9.0.0
#373
dependabot[bot]
closed
2 years ago
2
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