[Every platform] Crash on Align tool 'Process'

altaic commented 4 years ago

Check all platforms you experienced the issue (change to `[x]`)

[ ] Windows
[ ] Mac OS
[ ] Linux
[x] Every platform

What type of issue is?

[ ] bug or unexpected behavior
[x] crash
[ ] feature request
[ ] other (specify...)

Describe your issue

This is on macOS 10.12.6 with MeshLab 2020.09. Also tested 2020.07, 2020.06, and 2020.05, as well as this unsigned build.

When I'm in the Align tool, after gluing point clouds, clicking the Process button causes an immediate crash. Note that I can still align with point-based gluing and then close the tool. Only clicking the Process button kills it, resulting in the following crash reporter output:

Process: meshlab [24570] Path: /Applications/meshlab.app/Contents/MacOS/meshlab Identifier: com.vcg.meshlab Version: 2020.09 (2020.09) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: meshlab [24570] User ID: 501

Date/Time: 2020-09-27 16:12:31.493 -0400 OS Version: Mac OS X 10.12.6 (16G2136) Report Version: 12 Anonymous UUID: C7644AFB-372E-C540-0568-F91AE546FD8B

Sleep/Wake UUID: 95A4699D-7DC7-42CD-9B53-13E4973814DB

Time Awake Since Boot: 9200000 seconds Time Since Wake: 320000 seconds

System Integrity Protection: enabled

Crashed Thread: 0 Dispatch queue: com.apple.main-thread

Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY

Termination Reason: DYLD, [0x4] Symbol missing

Dyld Error Message: Symbol not found: ____chkstk_darwin Referenced from: /Applications/meshlab.app/Contents/MacOS/../Frameworks/libomp.dylib Expected in: /usr/lib/libSystem.B.dylib

Thread 0 Crashed:: 0 dyld 1 dyld 2 dyld 3 dyld 4 dyld 5 libdyld.dylib 6 ??? 7 libomp.dylib 8 libedit_align.dylib 9 libedit_align.dylib 10 org.qt-project.QtCore 11 org.qt-project.QtWidgets 12 org.qt-project.QtWidgets 13 org.qt-project.QtWidgets 14 org.qt-project.QtWidgets 15 org.qt-project.QtWidgets 16 org.qt-project.QtWidgets 17 libmeshlab-common.1.dylib 18 org.qt-project.QtCore 19 org.qt-project.QtWidgets 20 org.qt-project.QtWidgets 21 org.qt-project.QtWidgets 22 org.qt-project.QtWidgets 23 org.qt-project.QtWidgets 24 libmeshlab-common.1.dylib 25 org.qt-project.QtCore 26 org.qt-project.QtGui 27 org.qt-project.QtGui 28 libqcocoa.dylib 29 libqcocoa.dylib 30 com.apple.CoreFoundation 31 com.apple.CoreFoundation 32 com.apple.CoreFoundation 33 com.apple.CoreFoundation 34 com.apple.HIToolbox 35 com.apple.HIToolbox 36 com.apple.HIToolbox 37 com.apple.AppKit 38 com.apple.AppKit 39 com.apple.AppKit 40 libqcocoa.dylib 41 org.qt-project.QtCore 42 org.qt-project.QtCore 43 com.vcg.meshlab 44 libdyld.dylib Dispatch queue: com.apple.main-thread 0x00000001109539ee abort_with_payload + 10 0x000000011095343b abort_with_payload_wrapper_internal + 90 0x0000000110953464 abort_with_payload + 9 0x000000011092e793 dyld::halt(char const*) + 361 0x000000011092e89e dyld::fastBindLazySymbol(ImageLoader**, unsigned long) + 139 0x00007fffc2840282 dyld_stub_binder + 282 0x0000000101756380 0 + 4319437696 0x00000001017078ce kmpc_fork_call + 301 0x000000010a8fa81d MeshTree::Process(vcg::AlignPair::Param&, MeshTree::Param&) + 2845 0x000000010a8ef642 EditAlignPlugin::process() + 226 0x0000000102b6968c QMetaObject::activate(QObject*, int, int, void) + 3132 0x0000000101a24e2f 0x10192a000 + 1027631 0x0000000101a24ccc 0x10192a000 + 1027276 0x0000000101a25dff QAbstractButton::mouseReleaseEvent(QMouseEvent) + 271 0x00000001019763bd QWidget::event(QEvent) + 445 0x000000010193a67d QApplicationPrivate::notify_helper(QObject, QEvent) + 269 0x000000010193d4d8 QApplication::notify(QObject, QEvent) + 7336 0x000000010181484e MeshLabApplication::notify(QObject, QEvent) + 14 0x0000000102b38324 QCoreApplication::notifyInternal2(QObject, QEvent) + 212 0x000000010193afa0 QApplicationPrivate::sendMouseEvent(QWidget, QMouseEvent, QWidget, QWidget, QWidget, QPointer&, bool, bool) + 896 0x000000010199590e 0x10192a000 + 440590 0x00000001019945c9 0x10192a000 + 435657 0x000000010193a67d QApplicationPrivate::notify_helper(QObject, QEvent) + 269 0x000000010193ba82 QApplication::notify(QObject, QEvent) + 594 0x000000010181484e MeshLabApplication::notify(QObject, QEvent) + 14 0x0000000102b38324 QCoreApplication::notifyInternal2(QObject, QEvent) + 212 0x0000000101f0f779 QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 3961 0x0000000101ef646b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 219 0x0000000104934900 0x1048fe000 + 223488 0x0000000104935068 0x1048fe000 + 225384 0x00007fffad05ea31 CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION + 17 0x00007fffad03f92d CFRunLoopDoSources0 + 557 0x00007fffad03ee26 CFRunLoopRun + 934 0x00007fffad03e824 CFRunLoopRunSpecific + 420 0x00007fffac59eebc RunCurrentEventLoopInMode + 240 0x00007fffac59ebf9 ReceiveNextEventCommon + 184 0x00007fffac59eb26 _BlockUntilNextEventMatchingListInModeWithFilter + 71 0x00007fffaab33a04 _DPSNextEvent + 1120 0x00007fffab2af7ee -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 2796 0x00007fffaab2838b -[NSApplication run] + 926 0x0000000104933de3 0x1048fe000 + 220643 0x0000000102b3393f QEventLoop::exec(QFlags) + 431 0x0000000102b38932 QCoreApplication::exec() + 130 0x0000000101537650 main + 1856 0x00007fffc2844235 start + 1

Thread 1: 0 libsystem_kernel.dylib 0x00007fffc297344e __workq_kernreturn + 10 1 libsystem_pthread.dylib 0x00007fffc2a5d621 _pthread_wqthread + 1426 2 libsystem_pthread.dylib 0x00007fffc2a5d07d start_wqthread + 13

Thread 2:: Qt bearer thread 0 libsystem_kernel.dylib 0x00007fffc297419e poll + 10 1 org.qt-project.QtCore 0x0000000102b8e48a qt_safe_poll(pollfd, unsigned int, timespec const) + 90 2 org.qt-project.QtCore 0x0000000102b8fe87 QEventDispatcherUNIX::processEvents(QFlags) + 903 3 org.qt-project.QtCore 0x0000000102b3393f QEventLoop::exec(QFlags) + 431 4 org.qt-project.QtCore 0x000000010296f13c QThread::exec() + 140 5 org.qt-project.QtCore 0x00000001029700b3 0x10294e000 + 139443 6 libsystem_pthread.dylib 0x00007fffc2a5d93b _pthread_body + 180 7 libsystem_pthread.dylib 0x00007fffc2a5d887 _pthread_start + 286 8 libsystem_pthread.dylib 0x00007fffc2a5d08d thread_start + 13

Thread 3:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fffc296b34a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fffc296a797 mach_msg + 55 2 com.apple.CoreFoundation 0x00007fffad03fb44 CFRunLoopServiceMachPort + 212 3 com.apple.CoreFoundation 0x00007fffad03efd1 CFRunLoopRun + 1361 4 com.apple.CoreFoundation 0x00007fffad03e824 CFRunLoopRunSpecific + 420 5 com.apple.AppKit 0x00007fffaac80f02 _NSEventThread + 205 6 libsystem_pthread.dylib 0x00007fffc2a5d93b _pthread_body + 180 7 libsystem_pthread.dylib 0x00007fffc2a5d887 _pthread_start + 286 8 libsystem_pthread.dylib 0x00007fffc2a5d08d thread_start + 13

Thread 4: 0 libsystem_kernel.dylib 0x00007fffc297344e __workq_kernreturn + 10 1 libsystem_pthread.dylib 0x00007fffc2a5d621 _pthread_wqthread + 1426 2 libsystem_pthread.dylib 0x00007fffc2a5d07d start_wqthread + 13

Thread 5:: com.apple.coreanimation.render-server 0 libsystem_kernel.dylib 0x00007fffc296b34a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fffc296a797 mach_msg + 55 2 com.apple.QuartzCore 0x00007fffb2c27b38 CA::Render::Server::server_thread(void*) + 272 3 com.apple.QuartzCore 0x00007fffb2cd838f thread_fun + 25 4 libsystem_pthread.dylib 0x00007fffc2a5d93b _pthread_body + 180 5 libsystem_pthread.dylib 0x00007fffc2a5d887 _pthread_start + 286 6 libsystem_pthread.dylib 0x00007fffc2a5d08d thread_start + 13

Thread 6: 0 libsystem_kernel.dylib 0x00007fffc297344e __workq_kernreturn + 10 1 libsystem_pthread.dylib 0x00007fffc2a5d621 _pthread_wqthread + 1426 2 libsystem_pthread.dylib 0x00007fffc2a5d07d start_wqthread + 13

Thread 7: 0 libsystem_kernel.dylib 0x00007fffc297344e __workq_kernreturn + 10 1 libsystem_pthread.dylib 0x00007fffc2a5d621 _pthread_wqthread + 1426 2 libsystem_pthread.dylib 0x00007fffc2a5d07d start_wqthread + 13

Thread 8: 0 libsystem_kernel.dylib 0x00007fffc297344e __workq_kernreturn + 10 1 libsystem_pthread.dylib 0x00007fffc2a5d621 _pthread_wqthread + 1426 2 libsystem_pthread.dylib 0x00007fffc2a5d07d start_wqthread + 13

Thread 9:: Dispatch queue: NSCGSDisableUpdates 0 libsystem_kernel.dylib 0x00007fffc296b34a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fffc296a797 mach_msg + 55 2 com.apple.SkyLight 0x00007fffbeb8ff20 _CGSReenableUpdateForConnectionSync + 99 3 com.apple.SkyLight 0x00007fffbec93532 CGSUpdateManager::enable_update(unsigned long long) + 532 4 libdispatch.dylib 0x00007fffc2817524 _dispatch_call_block_and_release + 12 5 libdispatch.dylib 0x00007fffc280e8fc _dispatch_client_callout + 8 6 libdispatch.dylib 0x00007fffc28249a0 _dispatch_queue_serial_drain + 896 7 libdispatch.dylib 0x00007fffc2817306 _dispatch_queue_invoke + 1046 8 libdispatch.dylib 0x00007fffc281d020 _dispatch_queue_override_invoke + 369 9 libdispatch.dylib 0x00007fffc28106b5 _dispatch_root_queue_drain + 476 10 libdispatch.dylib 0x00007fffc281048c _dispatch_worker_thread3 + 99 11 libsystem_pthread.dylib 0x00007fffc2a5d5a2 _pthread_wqthread + 1299 12 libsystem_pthread.dylib 0x00007fffc2a5d07d start_wqthread + 13

Thread 10: 0 libsystem_kernel.dylib 0x00007fffc297344e __workq_kernreturn + 10 1 libsystem_pthread.dylib 0x00007fffc2a5d621 _pthread_wqthread + 1426 2 libsystem_pthread.dylib 0x00007fffc2a5d07d start_wqthread + 13

Thread 11: 0 libsystem_kernel.dylib 0x00007fffc297344e __workq_kernreturn + 10 1 libsystem_pthread.dylib 0x00007fffc2a5d621 _pthread_wqthread + 1426 2 libsystem_pthread.dylib 0x00007fffc2a5d07d start_wqthread + 13

Thread 12: 0 libsystem_kernel.dylib 0x00007fffc297344e __workq_kernreturn + 10 1 libsystem_pthread.dylib 0x00007fffc2a5d621 _pthread_wqthread + 1426 2 libsystem_pthread.dylib 0x00007fffc2a5d07d start_wqthread + 13

Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000002000209 rbx: 0x0000000000000004 rcx: 0x00007fff5e6c9fb8 rdx: 0x00007fff5e6ca430 rdi: 0x0000000000000006 rsi: 0x0000000000000004 rbp: 0x00007fff5e6ca010 rsp: 0x00007fff5e6c9fb8 r8: 0x00007fff5e6ca030 r9: 0x0000000000000000 r10: 0x0000000000000085 r11: 0x0000000000000246 r12: 0x0000000000000085 r13: 0x00007fff5e6ca430 r14: 0x0000000000000006 r15: 0x0000000000000000 rip: 0x00000001109539ee rfl: 0x0000000000000246 cr2: 0x000000010fbb1000

Logical CPU: 0 Error Code: 0x02000209 Trap Number: 133

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0x7fffc261fff7 libutil.dylib (47.30.1) <88CC63B3-0EDF-306E-9AB5-D87EBE0F3F16> /usr/lib/libutil.dylib 0x7fffc2620000 - 0x7fffc262dff7 libxar.1.dylib (417.1) <78B14DC5-5256-3820-8259-117C5046BB9F> /usr/lib/libxar.1.dylib 0x7fffc262e000 - 0x7fffc271dff3 libxml2.2.dylib (30.24) /usr/lib/libxml2.2.dylib 0x7fffc271e000 - 0x7fffc2747fff libxslt.1.dylib (15.9.3) /usr/lib/libxslt.1.dylib 0x7fffc2748000 - 0x7fffc2759ff3 libz.1.dylib (67) <46E3FFA2-4328-327A-8D34-A03E20BFFB8E> /usr/lib/libz.1.dylib 0x7fffc2768000 - 0x7fffc276cff7 libcache.dylib (79) <093A4DAB-8385-3D47-A350-E20CB7CCF7BF> /usr/lib/system/libcache.dylib 0x7fffc276d000 - 0x7fffc2777fff libcommonCrypto.dylib (60092.50.5) <4C8A7FE1-C190-3015-A744-66F8220EAF6A> /usr/lib/system/libcommonCrypto.dylib 0x7fffc2778000 - 0x7fffc277ffff libcompiler_rt.dylib (62) <55D47421-772A-32AB-B529-1A46C2F43B4D> /usr/lib/system/libcompiler_rt.dylib 0x7fffc2780000 - 0x7fffc2788fff libcopyfile.dylib (138) <819BEA3C-DF11-3E3D-A1A1-5A51C5BF1961> /usr/lib/system/libcopyfile.dylib 0x7fffc2789000 - 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External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 8 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 581811000 thread_create: 0 thread_set_state: 0

VM Region Summary: ReadOnly portion of Libraries: Total=390.0M resident=0K(0%) swapped_out_or_unallocated=390.0M(100%) Writable regions: Total=526.7M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=526.7M(100%)

                            VIRTUAL   REGION

REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 512K 5 Activity Tracing 256K 2 CG backing stores 52.4M 9 CG image 596K 69 CoreAnimation 252K 19 CoreImage 60K 8 CoreUI image data 5552K 36 CoreUI image file 300K 6 Foundation 4K 2 Image IO 12K 2 Kernel Alloc Once 8K 2 MALLOC 406.5M 84 MALLOC guard page 48K 10 Memory Tag 242 12K 2 Memory Tag 251 12K 2 OpenCL 16K 3 OpenGL GLSL 256K 4 STACK GUARD 56.0M 14 Stack 14.1M 14 VM_ALLOCATE 30.8M 50 DATA 36.1M 427 DATA_CONST 4K 2 GLSLBUILTINS 2588K 2 IMAGE 528K 2 LINKEDIT 129.6M 116 TEXT 260.4M 402 __UNICODE 556K 2 mapped file 65.0M 58 shared memory 16.4M 16 =========== ======= ======= TOTAL 1.1G 1341

altaic commented 4 years ago

Terminal output:

$ /Applications/meshlab.app/Contents/MacOS/meshlab
The base dir is /Applications/meshlab.app/Contents
The base dir is /Applications/meshlab.app/Contents
The base dir is /Applications/meshlab.app/Contents
Current Plugins Dir is: /Applications/meshlab.app/Contents/plugins 
Shader directory found '/Applications/meshlab.app/Contents/shaders', and it contains 19 gdp files

alemuntoni commented 4 years ago

could you please attach the files that cause the crash?

stale[bot] commented 3 years ago

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

aslze commented 3 years ago

I've been having this problem on Windows too. I just tried the latest version (2020.12).

I try to align two point clouds (quite dense, over 1 M vertices each). They are loaded from PLY files and have vertex normals (they look nicely shaded in the view).

I click glue here visible meshes. Then click Process. And a little after that, MeshLab closes with no message. I don't know how to find all that debug/backtrace info on Windows.

alemuntoni commented 3 years ago

There is nothing I can do here. I need a crash that it is reproducible:

the files of the meshes involved should be attached;
exact sequence of performed operations (load mesh1, load mesh2, open align tool, click on button XXX...)

otherwise, I cannot reproduce the crash and therefore I cannot debug and solve it.

If the files are too big, try first to sample the point clouds (clustered vertex sampling could be used), and check if the crash happens also with the sampled point cloud.

aslze commented 3 years ago

Hi,

I just cut a subset of these two point clouds to make them smaller. They have normals.

Here they are: pointsets.zip

Steps:

1) Open both PLY files (drag them into meshlab) 2) Open the Align tool 3) Click glue here visible meshes (an asterisk appears in both) 4) Click Process

After some initial processing MeshLab suddenly closes.

PS: I moved the clouds a bit closer to make the alignment easier. My original points are a bit more misaligned, but anyway this still crashes.

alemuntoni commented 3 years ago

Thanks @aslze, I can confirm that the crash happens on every platform. I will investigate this ASAP!

spiderspiderspider commented 2 years ago

Hi,

Any update to this? I'm experiencing this same issue.

kljklhk commented 1 year ago

the crash is happening, because the array BKT is accessed at index -1 here: https://github.com/cnr-isti-vclab/vcglib/blob/a443e903a66e14a44b170056eee90d233cd753f9/vcg/complex/algorithms/align_pair.h#L467

cnr-isti-vclab / meshlab