Open Leehyeonjin93 opened 6 years ago
Hi, I need to change tracking id about genes.fpkm_tracking and isoforms.fpkm_tracking. (cufflinks output) for example, I have tracking_id class_code nearest_ref_id gene_id gene_short_name tss_id locus length coverage FPKM FPKM_conf_lo FPKM_conf_hi FPKM_status Xkr4 - - Xkr4 Xkr4 TSS27105 1:3214481-3671498 - - 0 0 0 OK Rp1 - - Rp1 Rp1 TSS2867,TSS6138 1:4290845-4409241 - - 0 0 0 OK Sox17 - - Sox17 Sox17 TSS26180 1:4490927-4497354 - - 0 0 0 OK Lypla1 - - Lypla1 Lypla1 TSS27011 1:4807892-4846735 - - 18.4067 17.3559 19.4575 OK Mrpl15 - - Mrpl15 Mrpl15 TSS25007 1:4773199-4785726 - - 29.7552 28.1379 31.3726 OK
(genes.fpkm_tracking)
tracking_id class_code nearest_ref_id gene_id gene_short_name tss_id locus length coverage FPKM FPKM_conf_lo FPKM_conf_hi FPKM_status NM_001011874 - - Xkr4 Xkr4 TSS27105 1:3214481-3671498 3634 0 0 0 0 OK NM_001195662 - - Rp1 Rp1 TSS6138 1:4290845-4409241 3047 0 0 0 0 OK NM_011283 - - Rp1 Rp1 TSS2867 1:4343506-4360314 7508 0 0 0 0 OK NM_001289467 - - Sox17 Sox17 TSS26180 1:4490927-4497354 2897 0 0 0 0 OK NM_001289464 - - Sox17 Sox17 TSS26180 1:4490927-4497354 3288 0 0 0 0 OK
(isoforms.fpkm_tracking)
I want to convert tracking id to ensembl gene id in genes.fpkm_tracking. and want to convert tacking id to ensembl transcript ID in isoforms.fpkm_tracking.
Do you have any cufflinks options? or Do you know any methods to convert them?
thank you.
Hi, I need to change tracking id about genes.fpkm_tracking and isoforms.fpkm_tracking. (cufflinks output) for example, I have tracking_id class_code nearest_ref_id gene_id gene_short_name tss_id locus length coverage FPKM FPKM_conf_lo FPKM_conf_hi FPKM_status Xkr4 - - Xkr4 Xkr4 TSS27105 1:3214481-3671498 - - 0 0 0 OK Rp1 - - Rp1 Rp1 TSS2867,TSS6138 1:4290845-4409241 - - 0 0 0 OK Sox17 - - Sox17 Sox17 TSS26180 1:4490927-4497354 - - 0 0 0 OK Lypla1 - - Lypla1 Lypla1 TSS27011 1:4807892-4846735 - - 18.4067 17.3559 19.4575 OK Mrpl15 - - Mrpl15 Mrpl15 TSS25007 1:4773199-4785726 - - 29.7552 28.1379 31.3726 OK
(genes.fpkm_tracking)
tracking_id class_code nearest_ref_id gene_id gene_short_name tss_id locus length coverage FPKM FPKM_conf_lo FPKM_conf_hi FPKM_status NM_001011874 - - Xkr4 Xkr4 TSS27105 1:3214481-3671498 3634 0 0 0 0 OK NM_001195662 - - Rp1 Rp1 TSS6138 1:4290845-4409241 3047 0 0 0 0 OK NM_011283 - - Rp1 Rp1 TSS2867 1:4343506-4360314 7508 0 0 0 0 OK NM_001289467 - - Sox17 Sox17 TSS26180 1:4490927-4497354 2897 0 0 0 0 OK NM_001289464 - - Sox17 Sox17 TSS26180 1:4490927-4497354 3288 0 0 0 0 OK
(isoforms.fpkm_tracking)
I want to convert tracking id to ensembl gene id in genes.fpkm_tracking. and want to convert tacking id to ensembl transcript ID in isoforms.fpkm_tracking.
Do you have any cufflinks options? or Do you know any methods to convert them?
thank you.