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colomemaria / epiAneufinder

R package to detect breakpoints and assign somies to scATAC-seq data
GNU General Public License v3.0
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using epiAneufinder in CUT&Tag #6

Closed nouroddinc closed 3 months ago

nouroddinc commented 1 year ago

Thank you so much for preparing this useful package. I have used it on my ATAC-seq data and it clearly showed differences between malignant/normal cells. I was wondering is it possible to use epiAneufinder on CUT&Tag sequencing data? Many Thanks, Noori

thek71 commented 1 year ago

Dear Noorti,

sorry for the late response. So far we have only tested epiAneufinder on methylation data. It would be interesting to try out on CUT&Tag, but this is not in our immediate plans. We will add it in our list of possible extensions.

Best regards, Katia