search

compSPI / simSPI

Generative Models
9 stars 10 forks source link

generate initial datasets available with simSPI #49

Open geoffwoollard opened 2 years ago

geoffwoollard commented 2 years ago

Prerequisite: the TEM simulator is wrapped with CTF and noise, using the container TEM simulator.

Scope: generate 1k particles of the following datasets to be made available on ioSPI.

  1. ribosome (~2 Angstrom): PDB 7k00
  2. spliceosome (~4A): PDB: 5nrl
  3. Gaba B (~3-4A): PDB 7eb2
geoffwoollard commented 2 years ago

Suggested deadline: Jan 28

fredericpoitevin commented 2 years ago

Where do we stand with this issue @geoffwoollard ?

geoffwoollard commented 2 years ago

The capstone students did not get to it. Now that they are wrapped up (report midnight Friday), I'll do it.

I've have set up a custom python environment and remote jupyter notebook on the sockeye clsuter at UBC to run things.

Let me generate some results on 1. next week.

How does that sound?

ninamiolane commented 2 years ago

This issue has been converted into 3 tasks for the hackathon: