New GUI using Gooey, PyInstaller, and Inno Setup - Githubissues

compomics / DeepLC

DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

https://iomics.ugent.be/deeplc

Apache License 2.0

52 stars 18 forks source link

New GUI using Gooey, PyInstaller, and Inno Setup #42

Closed RalfG closed 2 years ago

RalfG commented 2 years ago

Added

New native Python GUI, based on the Gooey package
New standalone installer for Windows using PyInstaller and Inno Setup
Added deeplc-gui entrypoint to start GUI from the command line

Changed

CLI: Restructured help message
Made DeepLC class API docstring consistent with CLI help message
Docs: Moved dict_divider and split_cal explanation to README Q&A section.
CI: Only run tests on commits to master or from a PR
Refactoring: Cleaned up __main__.py
Logging: Changed some loggings from DEBUG to INFO level, some from WARNING to INFO or DEBUG level.

Removed

Removed Java-based GUI in favor of new Python-based GUI

Fixed

If run through CLI/GUI, all Tensorflow warnings are now fully suppressed
Added --legacy_calibration CLI option to allow for old piecewise linear calibration while new pyGAM calibration method is default. --legacy_calibration is mutually exclusive with --pygam_calibration.