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RATTLE
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
GNU General Public License v3.0
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Installation GCC version + segfaults
#59
srisarya
opened
1 month ago
1
will future version include more CPUs, including apple-m1?
#57
ananzen
opened
2 months ago
0
how to compile statically linked?
#56
fishpm-anu
opened
3 months ago
0
Failed cluster extraction on the server
#55
officialnaturalist
opened
3 months ago
1
Using intermediate output for RNA-Bloom2 transcriptome assembly?
#54
patrickaoude
opened
3 months ago
1
Visualisation of cluster.out
#53
ddrazoh
opened
6 months ago
0
Losing clusters during correction stage
#52
mjudd8
opened
9 months ago
1
How can I cluster multiple Nanopore sequencing data together?
#51
sheevivian
opened
11 months ago
1
rattle correction step giving error
#50
dvirdi01
opened
1 year ago
9
rattle cluster_summary command not working
#49
dvirdi01
closed
1 year ago
1
Using RATTLE on illumina and nanopore reads
#48
phrh
opened
1 year ago
5
Cannot build recent RATTLE versions
#47
claumer
closed
1 year ago
2
Memory error: Killed?
#46
CWYuan08
closed
1 year ago
3
read to transcript relationship in final polished transcriptome.fq
#45
alexyfyf
closed
1 year ago
2
Unable to install in ubuntu 22 version , facing error during build
#44
krishnakazama
closed
1 year ago
5
No options to convert
#43
FlintMitchell
closed
1 year ago
3
correct.cpp errors: 'createAlignmentEngine' & 'createGraph' not a member of 'spoa'
#42
josiah-liew
closed
1 year ago
2
parameters for stranded cDNA
#41
alexyfyf
closed
1 year ago
5
ERROR when installing RATTLE
#40
angus821
closed
1 year ago
13
Illegal instruction error on RATTLE correct
#39
Csam488
opened
2 years ago
7
How to proceed with the output after polishing the data?
#38
yeroslaviz
closed
2 years ago
6
main.cpp error
#37
Threeman8
closed
2 years ago
2
Segmentation fault due to N containing transcripts
#36
abs-yy
closed
2 years ago
2
Feature/sample tracking
#35
kishorJ99
closed
2 years ago
1
Error during correct
#34
bauerlev
closed
2 years ago
1
Support for Windows-style linebreaks
#33
jjcrawford
closed
2 years ago
1
If -iso-score-threshold value is given, no Clustering.
#32
jkbenotmane
closed
2 years ago
2
Error during compilation
#31
kmnip
closed
2 years ago
4
error during rattle correct
#30
glopatriello
closed
2 years ago
1
Error during rattle correct
#29
lananh-ngn
opened
3 years ago
1
Combine IsoSeq and transcripts from de novo annotation?
#28
Adamtaranto
opened
3 years ago
1
Correction step produces wrong fastq formatted files.
#27
aswathyseb
closed
3 years ago
3
Segmentation fault (core dumped)
#26
BJ-Chen-Eric
opened
3 years ago
14
Memory issue
#25
shernadi
opened
3 years ago
11
No output file generated!!!
#24
Amrita-Vijay
closed
2 years ago
14
Stranding Information Format for --rna Clustering
#23
danphillips28
closed
3 years ago
1
Compile error 'is not a member of std'
#22
dn-ra
closed
3 years ago
5
mapping isoform transcriptome to genes?
#21
xuesoso
closed
2 years ago
2
error
#20
yi1873
opened
4 years ago
0
creating output dir
#19
andreirozanski
closed
3 years ago
1
Segmentation Fault in Correcting Step
#18
qhauck16
opened
4 years ago
20
Error when try to run ./rattle
#17
Kirovez
opened
4 years ago
6
Cannot call ./rattle
#16
huangzk20
opened
4 years ago
4
Segmentation fault (core dumped)
#15
pedronachtigall
opened
4 years ago
0
cannot create std::vector larger than max_size()
#14
cnk113
opened
4 years ago
7
Use own clustering
#13
nadiadavidson
opened
4 years ago
1
question about the min_reads during correct step
#12
huangziyan11111
opened
4 years ago
0
running error with "terminate called after throwing an instance of 'std::bad_alloc'"
#11
huangziyan11111
closed
4 years ago
4
many error when run make (such as undefined reference...)
#10
huangziyan11111
closed
4 years ago
1
./build.sh get CMake Error
#9
huangziyan11111
closed
4 years ago
2
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