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const-ae / glmGamPoi

Fit Gamma-Poisson Generalized Linear Models Reliably
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compilation error #49

Open Jiayi-Wang-Joey opened 1 year ago

Jiayi-Wang-Joey commented 1 year ago

Hi Thanks for your great work!

I was trying to install LEMUR on R, however I have encountered this error.

ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
ld: library not found for -lgfortran
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [glmGamPoi.so] Error 1
ERROR: compilation failed for package ‘glmGamPoi’
* removing ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library/glmGamPoi’
Warning: installation of package ‘/var/folders/jp/zptlfyzn5z3dz53d2c0hcft40000gn/T//RtmpDqImAo/file5611ee0480b/glmGamPoi_1.11.8.tar.gz’ had non-zero exit status

I have tried to re-install the x-code that you mentioned in another same issue. However, I still give this error. I am using MacBook with M1 chip, will this be a problem?

Thanks in advance!

Kind regards, Jiayi

const-ae commented 1 year ago

Hi Jiayi,

Thanks for reaching out and sorry about the trouble installing the package.

Have you tried to install gfortran using the instructions from https://mac.r-project.org/tools/ Apple silicon macs?

Best, Constantin

const-ae commented 1 year ago

Alternatively, if you feel a bit adventurous, I just saw an announcement on Twitter for a new R package that is trying to resolve these issues by setting up the compilation toolchain for you: https://mac.thecoatlessprofessor.com/macrtools/