KP.2.5+Orf1a:N704K, S:S31del (79 seqs, 13 countries, 22 with S:A688V, 5 with S:T22N)

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Repository for suggesting new lineages that should be added to the current scheme

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KP.2.5+Orf1a:N704K, S:S31del (79 seqs, 13 countries, 22 with S:A688V, 5 with S:T22N) #2740

Open xz-keg opened 3 months ago

xz-keg commented 3 months ago

From branch 33 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1502

KP.2.5+C592T+C2377T, del21653_21655(Orf1a:N704K,S:S31del)

GISAID query: T592C,T2377G,A22115G No. of seqs: 34(Canada 3 Denmark 1 UK 3 France 1 Germany 1 India 2 Netherlands 3 Singapore 1 USA 19(1 from UK 2 from Greece))

First: EPI_ISL_19182326, Singapore, 2024-5-13 Latest: EPI_ISL_19343867, Canada, 2024-8-10

GISAID query for S:A688V sub-branch: T592C,T2377G,A22115G,C23625T(10 seqs) GISAID query for S:T22N sub-branch: T592C,T2377G,A22115G,C21627A

usher

FedeGueli commented 3 months ago

38 now

FedeGueli commented 3 months ago

39/12

FedeGueli commented 3 months ago

Now this has got S:T22N in two samples from Ontario: Query: C21627A, C27509T,del21653

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_2cbc7_ae4f40.json?label=id:node_7014012

xz-keg commented 2 months ago

48,Ireland

FedeGueli commented 2 months ago

53,

FedeGueli commented 2 months ago

54 and 3rd seq for the 22N branch from Minnesota collected late in August

xz-keg commented 2 months ago

59, Spain

FedeGueli commented 1 month ago

4th with 22N as highlighted.. this could become interesting

xz-keg commented 1 month ago

75, Poland, with S:T22N

DailyCovidCases commented 3 weeks ago

@xz-keg Dead please close it

FedeGueli commented 3 weeks ago

..close it

agree likely dying off