Set tool versions for conda environments

[o-william-white]

Hello,

Thanks for sharing Orthoskim, looking forward to testing it out.

I have been trying to run the example data, but I found that conda installs the most recent versions of tools by default, and I think this caused an error with biopython.

I also tried to set up the orthoskim environment using the .yml file provided, but I had a perl conda dependcy clash.

I used the code below to set up my environment, but I expect there is a cleaner way of doing this.

conda create --name orthoskim_env -y
conda activate orthoskim_env
conda install -c conda-forge python=3.7.5 ete3=3.1.1 biopython=1.74 numpy=1.17.2 -y
conda install -c bioconda spades=3.13.1 exonerate=2.2.0 diamond=0.9.14 blast=2.9.0 mafft=7.505 trimal joblib=0.14.1 scipy -y

Cheers Ollie