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cran / adiv

:exclamation: This is a read-only mirror of the CRAN R package repository. adiv — Analysis of Diversity
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Error: package 'foreign' is not available #1

Open nick-youngblut opened 3 years ago

nick-youngblut commented 3 years ago

@sandrinePavoine 

> renv::install('adiv')
Retrieving 'https://cloud.r-project.org/src/contrib/adiv_2.0.1.tar.gz' ...
    OK [downloaded 921.1 Kb in 0.4 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/adegraphics_1.0-15.tar.gz' ...
    OK [downloaded 2.9 Mb in 0.3 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/KernSmooth_2.23-17.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/latticeExtra_0.6-29.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/png_0.1-7.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/jpeg_0.1-8.1.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/adephylo_1.1-11.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/phylobase_0.8.10.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/rncl_0.8.4.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/progress_1.2.2.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/hms_0.5.3.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/RNeXML_2.4.5.tar.gz' ...
    OK [downloaded 462 Kb in 0.2 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/XML_3.99-0.3.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/plyr_1.8.6.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/reshape2_1.4.4.tar.gz' ...
    OK [downloaded 36.4 Kb in 0.1 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/stringr_1.4.0.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/stringi_1.5.3.tar.gz' ...
    OK [downloaded 7 Mb in 0.3 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/httr_1.4.2.tar.gz' ...
    OK [downloaded 156.2 Kb in 0.1 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/curl_4.3.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/mime_0.9.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/openssl_1.4.3.tar.gz' ...
    OK [downloaded 1.2 Mb in 0.2 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/askpass_1.1.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/sys_3.4.tar.gz' ...
    OK [downloaded 19.7 Kb in 0.1 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/lazyeval_0.2.2.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/cpp11_0.2.3.tar.gz' ...
    OK [downloaded 156.3 Kb in 0.2 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/xml2_1.3.2.tar.gz' ...
    OK [downloaded 265.5 Kb in 0.2 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/adegenet_2.1.3.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/igraph_1.2.6.tar.gz' ...
    OK [downloaded 2.6 Mb in 0.3 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/shiny_1.5.0.tar.gz' ...
    OK [downloaded 3.3 Mb in 0.2 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/httpuv_1.5.4.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/promises_1.1.1.tar.gz' ...
    OK [downloaded 2.5 Mb in 0.3 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/later_1.1.0.1.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/BH_1.72.0-3.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/xtable_1.8-4.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/sourcetools_0.1.7.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/fastmap_1.0.1.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/commonmark_1.7.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/seqinr_4.2-4.tar.gz' ...
    OK [downloaded 3.4 Mb in 0.3 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/segmented_1.2-0.tar.gz' ...
    OK [downloaded 108.3 Kb in 0.1 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/spdep_1.1-5.tar.gz' ...
    OK [downloaded 2.7 Mb in 0.3 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/deldir_0.1-29.tar.gz' ...
    OK [downloaded 105.9 Kb in 0.2 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/boot_1.3-25.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/LearnBayes_2.15.1.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/coda_0.19-4.tar.gz' ...
    OK [downloaded 72.5 Kb in 0.1 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/expm_0.999-5.tar.gz' ...
    OK [downloaded 133.5 Kb in 0.2 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/gmodels_2.18.1.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/gdata_2.18.0.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/gtools_3.8.2.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/spData_0.3.8.tar.gz' ...
    OK [downloaded 3.6 Mb in 0.3 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/raster_3.3-13.tar.gz' ...
    OK [downloaded 561.1 Kb in 0.2 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/sf_0.9-6.tar.gz' ...
    OK [downloaded 4 Mb in 0.3 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/classInt_0.4-3.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/e1071_1.7-4.tar.gz' ...
    OK [downloaded 564.1 Kb in 0.2 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/class_7.3-17.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/DBI_1.1.0.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/units_0.6-7.tar.gz' ...
    OK [downloaded 934.8 Kb in 0.2 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/phytools_0.7-70.tar.gz' ...
    OK [downloaded 314.7 Kb in 0.2 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/clusterGeneration_1.3.5.tar.gz' ...
    OK [downloaded 51.3 Kb in 0.1 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/combinat_0.0-8.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/mnormt_2.0.2.tar.gz' ...
    OK [downloaded 49.4 Kb in 0.1 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/tmvnsim_1.0-2.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/numDeriv_2016.8-1.1.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/phangorn_2.5.5.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/quadprog_1.5-8.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/fastmatch_1.1-0.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/plotrix_3.7-8.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/scatterplot3d_0.3-41.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/maps_3.3.0.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/rgl_0.100.54.tar.gz' ...
    OK [downloaded 2.8 Mb in 0.3 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/htmlwidgets_1.5.2.tar.gz' ...
    OK [downloaded 312.9 Kb in 0.2 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/yaml_2.2.1.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/knitr_1.30.tar.gz' ...
    OK [downloaded 866.8 Kb in 0.2 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/highr_0.8.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/markdown_1.1.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/xfun_0.18.tar.gz' ...
    OK [downloaded 87.8 Kb in 0.1 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/crosstalk_1.1.0.1.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/manipulateWidget_0.10.1.tar.gz' ...
    OK [downloaded 3 Mb in 0.3 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/miniUI_0.1.1.1.tar.gz' ...
    OK [downloaded 95.7 Kb in 0.1 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/codetools_0.2-16.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/webshot_0.5.2.tar.gz' ...
    OK [downloaded 154.1 Kb in 0.2 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/FactoMineR_2.3.tar.gz' ...
    OK [downloaded 2.7 Mb in 0.2 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/car_3.0-10.tar.gz' ...
    OK [downloaded 489.5 Kb in 0.2 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/nnet_7.3-14.tar.gz' ...
    OK [downloaded 28.4 Kb in 0.1 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/pbkrtest_0.4-8.6.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/lme4_1.1-25.tar.gz' ...
    OK [downloaded 3.1 Mb in 0.2 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/minqa_1.2.4.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/nloptr_1.2.2.2.tar.gz' ...
    OK [downloaded 2.3 Mb in 0.2 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/statmod_1.4.35.tar.gz' ...
    OK [downloaded 60.4 Kb in 0.1 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/RcppEigen_0.3.3.7.0.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/quantreg_5.74.tar.gz' ...
    OK [downloaded 982.9 Kb in 0.2 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/MatrixModels_0.4-1.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/conquer_1.0.2.tar.gz' ...
    OK [downloaded 12 Kb in 0.1 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/matrixStats_0.57.0.tar.gz' ...
    OK [downloaded 184.5 Kb in 0.2 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/RcppArmadillo_0.10.1.0.0.tar.gz' ...
    OK [downloaded 1.6 Mb in 0.2 secs]
Retrieving 'https://cloud.r-project.org/src/contrib/SparseM_1.78.tar.gz' ...
    OK [file is up to date]
Retrieving 'https://cloud.r-project.org/src/contrib/maptools_1.0-2.tar.gz' ...
    OK [downloaded 1.5 Mb in 0.2 secs]
Error: package 'foreign' is not available
Traceback (most recent calls last):
37: renv::install("adiv")
36: renv_retrieve(packages)
35: handler(package, renv_retrieve_impl(package))
34: renv_retrieve_impl(package)
33: renv_retrieve_repos(record)
32: renv_retrieve_repos_impl(record)
31: renv_retrieve_package(record, url, path)
30: renv_retrieve_successful(record, path)
29: renv_retrieve(package)
28: handler(package, renv_retrieve_impl(package))
27: renv_retrieve_impl(package)
26: renv_retrieve_repos(record)
25: renv_retrieve_repos_impl(record)
24: renv_retrieve_package(record, url, path)
23: renv_retrieve_successful(record, path)
22: renv_retrieve(package)
21: handler(package, renv_retrieve_impl(package))
20: renv_retrieve_impl(package)
19: renv_retrieve_repos(record)
18: renv_retrieve_repos_impl(record)
17: renv_retrieve_package(record, url, path)
16: renv_retrieve_successful(record, path)
15: renv_retrieve(package)
14: handler(package, renv_retrieve_impl(package))
13: renv_retrieve_impl(package)
12: renv_retrieve_repos(record)
11: renv_retrieve_repos_impl(record)
10: renv_retrieve_package(record, url, path)
 9: renv_retrieve_successful(record, path)
 8: renv_retrieve(package)
 7: handler(package, renv_retrieve_impl(package))
 6: renv_retrieve_impl(package)
 5: records[[package]] %||% renv_retrieve_missing_record(package)
 4: renv_retrieve_missing_record(package)
 3: renv_available_packages_latest(package)
 2: stopf("package '%s' is not available", package)
 1: stop(sprintf(fmt, ...), call. = call.
> sessionInfo()
R version 3.6.3 (2020-02-29)
Platform: x86_64-conda-linux-gnu (64-bit)
Running under: Ubuntu 18.04.5 LTS

Matrix products: default
BLAS/LAPACK: /ebio/abt3_projects/Georg_animal_feces/envs/function/lib/libopenblasp-r0.3.10.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

loaded via a namespace (and not attached):
[1] compiler_3.6.3 tools_3.6.3    renv_0.12.0
gaborcsardi commented 3 years ago

Hi, this is a read only mirror of CRAN, please see the package authors and potentially URLs in the DESCRIPTION file. Thanks!