memory map must have a non-zero length

[wjq1981]

I get this error when I run peregrine-2021, can you help me to find out why? Thank you very much for your reply!

2023-05-24T06:56:33.690Z INFO [pg_asm] pg_asm peregrine-r 0.4.13 (bioconda release build, linux [x86_64] [rustc 1.58.1 (db9d1b20b 2022-01-20)]) 2023-05-24T06:56:33.691Z INFO [pg_asm] command: pg_asm seq.lst asm_out 2023-05-24T06:56:33.691Z INFO [pg_asm] current dir: /hdd/data/wangjq/Genome/Sorii/01.hifi 2023-05-24T06:56:33.691Z INFO [pg_asm] pg_asm run start 2023-05-24T06:56:33.691Z INFO [pg_asm::utils] BGN: pg_asm : (maxRSS, utime, stime): 3876 0 0 2023-05-24T06:56:33.691Z INFO [pg_asm] pg_asm run parameters: w:80, k:56, r:6, tol:0.01 bestn:6 2023-05-24T06:56:33.691Z INFO [pg_asm] faster mode: false 2023-05-24T06:56:33.691Z INFO [pg_asm] use layout method: 2 2023-05-24T06:56:33.691Z INFO [pg_asm] keep intermediate files: false 2023-05-24T06:56:33.691Z INFO [pg_asm] number of threads: 128 2023-05-24T06:56:33.691Z INFO [pg_asm] number of chunks: 128 2023-05-24T06:56:33.691Z INFO [pg_asm] input read file: seq.lst 2023-05-24T06:56:33.691Z INFO [pg_asm] working directory: asm_out 2023-05-24T06:56:33.691Z INFO [pg_asm] sys: number of physical CPU cores detected: 128 2023-05-24T06:56:34.802Z INFO [pg_asm] sys: total memory: 528150668 KB 2023-05-24T06:56:34.802Z INFO [pg_asm] sys: used memory: 285755728 KB 2023-05-24T06:56:34.802Z INFO [pg_asm] sys: total swap: 52428796 KB 2023-05-24T06:56:34.802Z INFO [pg_asm] sys: used swap: 52427612 KB 2023-05-24T06:56:34.803Z INFO [pg_asm::utils] BGN: get_ovlp, input_reads: seq.lst : (maxRSS, utime, stime): 100968 3 1 2023-05-24T06:56:34.803Z INFO [pg_asm::utils] BGN: bulding sequence database : (maxRSS, utime, stime): 100968 3 1 2023-05-24T06:56:34.803Z INFO [pg_asm::utils::build_sdb] create seq db: asm_out/reads.seqdb 2023-05-24T06:56:34.803Z INFO [pg_asm::utils::build_sdb] create seq index: asm_out/reads.idx 2023-05-24T06:56:34.803Z INFO [pg_asm::utils::build_sdb] get input files from: seq.lst 2023-05-24T06:56:34.803Z INFO [pg_asm::utils::build_sdb] input file: ./dwe.hifi.organelle.fasta.gz 2023-05-24T06:56:34.861Z INFO [pg_asm::utils::build_sdb] input file: ./dwe.hifi.organelle.fasta.gz detected as gz-compressed file 2023-05-24T07:08:21.348Z INFO [pg_asm::utils::build_sdb] total number of reads indexed: 1421240 2023-05-24T07:08:21.348Z INFO [pg_asm::utils::build_sdb] total number of bases: 27637611467 2023-05-24T07:08:21.348Z INFO [pg_asm::utils::build_sdb] average read length: 19446.125 2023-05-24T07:08:21.348Z INFO [pg_asm::utils] END: bulding sequence database : (maxRSS, utime, stime): 61461520 1306 202 2023-05-24T07:08:21.348Z INFO [pg_asm::utils] BGN: bulding shimmer : (maxRSS, utime, stime): 61461520 1306 202 2023-05-24T07:08:48.238Z INFO [pg_asm::utils] END: bulding shimmer : (maxRSS, utime, stime): 88600468 2401 225 2023-05-24T07:08:48.238Z INFO [pg_asm::utils] BGN: overlapping : (maxRSS, utime, stime): 88600468 2401 225 2023-05-24T07:08:49.076Z INFO [pg_asm::utils::ovlp] read_shmmr_index size: 0 2023-05-24T07:08:49.076Z INFO [pg_asm::utils::ovlp] smp_index: 0 2023-05-24T07:08:49.077Z INFO [pg_asm::utils::ovlp] remove 0 singletons from smp_index 2023-05-24T07:08:49.077Z INFO [pg_asm::utils::ovlp] smp_index size updated: 0 2023-05-24T07:08:49.077Z INFO [pg_asm::utils::ovlp] read seq idx: asm_out/reads.seqdb 2023-05-24T07:08:49.925Z INFO [pg_asm::utils::ovlp] read seq db: asm_out/reads.seqdb 2023-05-24T07:08:49.949Z INFO [pg_asm::utils] END: overlapping : (maxRSS, utime, stime): 88600468 2402 253 2023-05-24T07:08:49.949Z INFO [pg_asm::utils] END: get_ovlp - input_reads: seq.lst : (maxRSS, utime, stime): 88600468 2402 253 2023-05-24T07:08:50.061Z INFO [pg_asm::utils] BGN: ovlp_ec : (maxRSS, utime, stime): 88600468 2402 253 2023-05-24T07:08:50.061Z INFO [pg_asm::utils::ovlp_ec] read seq idx: asm_out/reads.seqdb 2023-05-24T07:08:51.034Z INFO [pg_asm::utils::ovlp_ec] read seq db: asm_out/reads.seqdb 2023-05-24T07:08:51.034Z INFO [pg_asm::utils::ovlp_ec] prefix: asm_out/reads-ovlp 2023-05-24T07:08:51.034Z INFO [pg_asm::utils::ovlp_ec] out_prefix: asm_out/ec_read 2023-05-24T07:08:51.099Z INFO [pg_asm::utils] END: ovlp_ec : (maxRSS, utime, stime): 88600468 2403 253 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.01 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.02 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.03 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.04 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.05 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.06 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.07 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.08 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.09 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.10 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.100 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.101 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.102 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.103 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.104 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.105 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.106 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.107 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.108 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.109 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.11 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.110 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.111 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.112 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.113 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.114 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.115 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.116 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.117 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.118 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.119 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.12 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.120 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.121 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.122 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.123 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.124 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.125 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.126 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.127 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.128 2023-05-24T07:08:51.101Z INFO [pg_asm] remove 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INFO [pg_asm] remove asm_out/reads-ovlp.28 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.29 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.30 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.31 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.32 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.33 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.34 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.35 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.36 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.37 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.38 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.39 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.40 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.41 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.42 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INFO [pg_asm] remove asm_out/reads-ovlp.72 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.73 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.74 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.75 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.76 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.77 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.78 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.79 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.80 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.81 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.82 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.83 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.84 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.85 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.86 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[pg_asm] remove asm_out/reads-shmr-02-of-128.dat 2023-05-24T07:08:51.109Z INFO [pg_asm] remove asm_out/reads-shmr-03-of-128.dat 2023-05-24T07:08:51.113Z INFO [pg_asm] remove asm_out/reads-shmr-04-of-128.dat 2023-05-24T07:08:51.115Z INFO [pg_asm] remove asm_out/reads-shmr-05-of-128.dat 2023-05-24T07:08:51.118Z INFO [pg_asm] remove asm_out/reads-shmr-06-of-128.dat 2023-05-24T07:08:51.148Z INFO [pg_asm] remove asm_out/reads-shmr-07-of-128.dat 2023-05-24T07:08:51.151Z INFO [pg_asm] remove asm_out/reads-shmr-08-of-128.dat 2023-05-24T07:08:51.154Z INFO [pg_asm] remove asm_out/reads-shmr-09-of-128.dat 2023-05-24T07:08:51.158Z INFO [pg_asm] remove asm_out/reads-shmr-10-of-128.dat 2023-05-24T07:08:51.162Z INFO [pg_asm] remove asm_out/reads-shmr-100-of-128.dat 2023-05-24T07:08:51.164Z INFO [pg_asm] remove asm_out/reads-shmr-101-of-128.dat 2023-05-24T07:08:51.167Z INFO [pg_asm] remove asm_out/reads-shmr-102-of-128.dat 2023-05-24T07:08:51.170Z INFO [pg_asm] remove asm_out/reads-shmr-103-of-128.dat 2023-05-24T07:08:51.174Z INFO [pg_asm] remove asm_out/reads-shmr-104-of-128.dat 2023-05-24T07:08:51.176Z INFO [pg_asm] remove asm_out/reads-shmr-105-of-128.dat 2023-05-24T07:08:51.179Z INFO [pg_asm] remove asm_out/reads-shmr-106-of-128.dat 2023-05-24T07:08:51.189Z INFO [pg_asm] remove asm_out/reads-shmr-107-of-128.dat 2023-05-24T07:08:51.192Z INFO [pg_asm] remove asm_out/reads-shmr-108-of-128.dat 2023-05-24T07:08:51.194Z INFO [pg_asm] remove asm_out/reads-shmr-109-of-128.dat 2023-05-24T07:08:51.456Z INFO [pg_asm] remove asm_out/reads-shmr-11-of-128.dat 2023-05-24T07:08:51.460Z INFO [pg_asm] remove asm_out/reads-shmr-110-of-128.dat 2023-05-24T07:08:51.462Z INFO [pg_asm] remove asm_out/reads-shmr-111-of-128.dat 2023-05-24T07:08:51.466Z INFO [pg_asm] remove asm_out/reads-shmr-112-of-128.dat 2023-05-24T07:08:51.468Z INFO [pg_asm] remove asm_out/reads-shmr-113-of-128.dat 2023-05-24T07:08:51.470Z INFO [pg_asm] remove asm_out/reads-shmr-114-of-128.dat 2023-05-24T07:08:51.472Z INFO [pg_asm] remove asm_out/reads-shmr-115-of-128.dat 2023-05-24T07:08:51.475Z INFO [pg_asm] remove asm_out/reads-shmr-116-of-128.dat 2023-05-24T07:08:51.478Z INFO [pg_asm] remove asm_out/reads-shmr-117-of-128.dat 2023-05-24T07:08:51.481Z INFO [pg_asm] remove asm_out/reads-shmr-118-of-128.dat 2023-05-24T07:08:51.485Z INFO [pg_asm] remove asm_out/reads-shmr-119-of-128.dat 2023-05-24T07:08:51.487Z INFO [pg_asm] remove asm_out/reads-shmr-12-of-128.dat 2023-05-24T07:08:51.489Z INFO [pg_asm] remove asm_out/reads-shmr-120-of-128.dat 2023-05-24T07:08:51.492Z INFO [pg_asm] remove asm_out/reads-shmr-121-of-128.dat 2023-05-24T07:08:51.496Z INFO [pg_asm] remove asm_out/reads-shmr-122-of-128.dat 2023-05-24T07:08:51.499Z INFO [pg_asm] remove asm_out/reads-shmr-123-of-128.dat 2023-05-24T07:08:51.770Z INFO [pg_asm] remove asm_out/reads-shmr-124-of-128.dat 2023-05-24T07:08:51.774Z INFO [pg_asm] remove asm_out/reads-shmr-125-of-128.dat 2023-05-24T07:08:51.777Z INFO [pg_asm] remove asm_out/reads-shmr-126-of-128.dat 2023-05-24T07:08:51.780Z INFO [pg_asm] remove asm_out/reads-shmr-127-of-128.dat 2023-05-24T07:08:51.784Z INFO [pg_asm] remove asm_out/reads-shmr-128-of-128.dat 2023-05-24T07:08:51.791Z INFO [pg_asm] remove asm_out/reads-shmr-13-of-128.dat 2023-05-24T07:08:51.794Z INFO [pg_asm] remove asm_out/reads-shmr-14-of-128.dat 2023-05-24T07:08:51.797Z INFO [pg_asm] remove asm_out/reads-shmr-15-of-128.dat 2023-05-24T07:08:51.799Z INFO [pg_asm] remove asm_out/reads-shmr-16-of-128.dat 2023-05-24T07:08:51.803Z INFO [pg_asm] remove asm_out/reads-shmr-17-of-128.dat 2023-05-24T07:08:51.805Z INFO [pg_asm] remove asm_out/reads-shmr-18-of-128.dat 2023-05-24T07:08:51.808Z INFO [pg_asm] remove asm_out/reads-shmr-19-of-128.dat 2023-05-24T07:08:51.810Z INFO [pg_asm] remove asm_out/reads-shmr-20-of-128.dat 2023-05-24T07:08:51.812Z INFO [pg_asm] remove asm_out/reads-shmr-21-of-128.dat 2023-05-24T07:08:51.814Z INFO [pg_asm] remove asm_out/reads-shmr-22-of-128.dat 2023-05-24T07:08:51.816Z INFO [pg_asm] remove asm_out/reads-shmr-23-of-128.dat 2023-05-24T07:08:51.820Z INFO [pg_asm] remove asm_out/reads-shmr-24-of-128.dat 2023-05-24T07:08:51.822Z INFO [pg_asm] remove asm_out/reads-shmr-25-of-128.dat 2023-05-24T07:08:51.825Z INFO [pg_asm] remove asm_out/reads-shmr-26-of-128.dat 2023-05-24T07:08:51.828Z INFO [pg_asm] remove asm_out/reads-shmr-27-of-128.dat 2023-05-24T07:08:51.832Z INFO [pg_asm] remove asm_out/reads-shmr-28-of-128.dat 2023-05-24T07:08:51.835Z INFO [pg_asm] remove asm_out/reads-shmr-29-of-128.dat 2023-05-24T07:08:51.837Z INFO [pg_asm] remove asm_out/reads-shmr-30-of-128.dat 2023-05-24T07:08:52.215Z INFO [pg_asm] remove asm_out/reads-shmr-31-of-128.dat 2023-05-24T07:08:52.218Z INFO [pg_asm] remove asm_out/reads-shmr-32-of-128.dat 2023-05-24T07:08:52.221Z INFO [pg_asm] remove asm_out/reads-shmr-33-of-128.dat 2023-05-24T07:08:52.223Z INFO [pg_asm] remove asm_out/reads-shmr-34-of-128.dat 2023-05-24T07:08:52.226Z INFO [pg_asm] remove asm_out/reads-shmr-35-of-128.dat 2023-05-24T07:08:52.228Z INFO [pg_asm] remove asm_out/reads-shmr-36-of-128.dat 2023-05-24T07:08:52.231Z INFO [pg_asm] remove asm_out/reads-shmr-37-of-128.dat 2023-05-24T07:08:52.233Z INFO [pg_asm] remove asm_out/reads-shmr-38-of-128.dat 2023-05-24T07:08:52.235Z INFO [pg_asm] remove asm_out/reads-shmr-39-of-128.dat 2023-05-24T07:08:52.238Z INFO [pg_asm] remove asm_out/reads-shmr-40-of-128.dat 2023-05-24T07:08:52.240Z INFO [pg_asm] remove asm_out/reads-shmr-41-of-128.dat 2023-05-24T07:08:52.242Z INFO [pg_asm] remove asm_out/reads-shmr-42-of-128.dat 2023-05-24T07:08:52.244Z INFO [pg_asm] remove asm_out/reads-shmr-43-of-128.dat 2023-05-24T07:08:52.246Z INFO [pg_asm] remove asm_out/reads-shmr-44-of-128.dat 2023-05-24T07:08:52.248Z INFO [pg_asm] remove asm_out/reads-shmr-45-of-128.dat 2023-05-24T07:08:52.249Z INFO [pg_asm] remove asm_out/reads-shmr-46-of-128.dat 2023-05-24T07:08:52.251Z INFO [pg_asm] remove asm_out/reads-shmr-47-of-128.dat 2023-05-24T07:08:52.254Z INFO [pg_asm] remove asm_out/reads-shmr-48-of-128.dat 2023-05-24T07:08:52.256Z INFO [pg_asm] remove asm_out/reads-shmr-49-of-128.dat 2023-05-24T07:08:52.258Z INFO [pg_asm] remove asm_out/reads-shmr-50-of-128.dat 2023-05-24T07:08:52.260Z INFO [pg_asm] remove asm_out/reads-shmr-51-of-128.dat 2023-05-24T07:08:52.262Z INFO [pg_asm] remove asm_out/reads-shmr-52-of-128.dat 2023-05-24T07:08:52.453Z INFO [pg_asm] remove asm_out/reads-shmr-53-of-128.dat 2023-05-24T07:08:52.456Z INFO [pg_asm] remove asm_out/reads-shmr-54-of-128.dat 2023-05-24T07:08:52.458Z INFO [pg_asm] remove asm_out/reads-shmr-55-of-128.dat 2023-05-24T07:08:52.461Z INFO [pg_asm] remove asm_out/reads-shmr-56-of-128.dat 2023-05-24T07:08:52.463Z INFO [pg_asm] remove asm_out/reads-shmr-57-of-128.dat 2023-05-24T07:08:52.465Z INFO [pg_asm] remove asm_out/reads-shmr-58-of-128.dat 2023-05-24T07:08:52.468Z INFO [pg_asm] remove asm_out/reads-shmr-59-of-128.dat 2023-05-24T07:08:52.470Z INFO [pg_asm] remove asm_out/reads-shmr-60-of-128.dat 2023-05-24T07:08:52.472Z INFO [pg_asm] remove asm_out/reads-shmr-61-of-128.dat 2023-05-24T07:08:52.476Z INFO [pg_asm] remove asm_out/reads-shmr-62-of-128.dat 2023-05-24T07:08:52.479Z INFO [pg_asm] remove asm_out/reads-shmr-63-of-128.dat 2023-05-24T07:08:52.481Z INFO [pg_asm] remove asm_out/reads-shmr-64-of-128.dat 2023-05-24T07:08:52.516Z INFO [pg_asm] remove asm_out/reads-shmr-65-of-128.dat 2023-05-24T07:08:52.519Z INFO [pg_asm] remove asm_out/reads-shmr-66-of-128.dat 2023-05-24T07:08:52.521Z INFO [pg_asm] remove asm_out/reads-shmr-67-of-128.dat 2023-05-24T07:08:52.525Z INFO [pg_asm] remove asm_out/reads-shmr-68-of-128.dat 2023-05-24T07:08:52.527Z INFO [pg_asm] remove asm_out/reads-shmr-69-of-128.dat 2023-05-24T07:08:52.529Z INFO [pg_asm] remove asm_out/reads-shmr-70-of-128.dat 2023-05-24T07:08:52.533Z INFO [pg_asm] remove asm_out/reads-shmr-71-of-128.dat 2023-05-24T07:08:52.535Z INFO [pg_asm] remove asm_out/reads-shmr-72-of-128.dat 2023-05-24T07:08:52.537Z INFO [pg_asm] remove asm_out/reads-shmr-73-of-128.dat 2023-05-24T07:08:52.539Z INFO [pg_asm] remove asm_out/reads-shmr-74-of-128.dat 2023-05-24T07:08:52.541Z INFO [pg_asm] remove asm_out/reads-shmr-75-of-128.dat 2023-05-24T07:08:52.544Z INFO [pg_asm] remove asm_out/reads-shmr-76-of-128.dat 2023-05-24T07:08:52.546Z INFO [pg_asm] remove asm_out/reads-shmr-77-of-128.dat 2023-05-24T07:08:52.548Z INFO [pg_asm] remove asm_out/reads-shmr-78-of-128.dat 2023-05-24T07:08:52.552Z INFO [pg_asm] remove asm_out/reads-shmr-79-of-128.dat 2023-05-24T07:08:52.555Z INFO [pg_asm] remove asm_out/reads-shmr-80-of-128.dat 2023-05-24T07:08:52.557Z INFO [pg_asm] remove asm_out/reads-shmr-81-of-128.dat 2023-05-24T07:08:52.560Z INFO [pg_asm] remove asm_out/reads-shmr-82-of-128.dat 2023-05-24T07:08:52.563Z INFO [pg_asm] remove asm_out/reads-shmr-83-of-128.dat 2023-05-24T07:08:52.566Z INFO [pg_asm] remove asm_out/reads-shmr-84-of-128.dat 2023-05-24T07:08:52.568Z INFO [pg_asm] remove asm_out/reads-shmr-85-of-128.dat 2023-05-24T07:08:52.570Z INFO [pg_asm] remove asm_out/reads-shmr-86-of-128.dat 2023-05-24T07:08:52.572Z INFO [pg_asm] remove asm_out/reads-shmr-87-of-128.dat 2023-05-24T07:08:52.575Z INFO [pg_asm] remove asm_out/reads-shmr-88-of-128.dat 2023-05-24T07:08:52.577Z INFO [pg_asm] remove asm_out/reads-shmr-89-of-128.dat 2023-05-24T07:08:52.580Z INFO [pg_asm] remove asm_out/reads-shmr-90-of-128.dat 2023-05-24T07:08:52.583Z INFO [pg_asm] remove asm_out/reads-shmr-91-of-128.dat 2023-05-24T07:08:52.585Z INFO [pg_asm] remove asm_out/reads-shmr-92-of-128.dat 2023-05-24T07:08:52.587Z INFO [pg_asm] remove asm_out/reads-shmr-93-of-128.dat 2023-05-24T07:08:52.590Z INFO [pg_asm] remove asm_out/reads-shmr-94-of-128.dat 2023-05-24T07:08:52.592Z INFO [pg_asm] remove asm_out/reads-shmr-95-of-128.dat 2023-05-24T07:08:52.595Z INFO [pg_asm] remove asm_out/reads-shmr-96-of-128.dat 2023-05-24T07:08:52.597Z INFO [pg_asm] remove asm_out/reads-shmr-97-of-128.dat 2023-05-24T07:08:52.599Z INFO [pg_asm] remove asm_out/reads-shmr-98-of-128.dat 2023-05-24T07:08:52.602Z INFO [pg_asm] remove asm_out/reads-shmr-99-of-128.dat 2023-05-24T07:09:01.199Z INFO [pg_asm] remove asm_out/reads.seqdb 2023-05-24T07:09:01.249Z INFO [pg_asm] remove asm_out/reads.idx 2023-05-24T07:09:01.251Z INFO [pg_asm] input reads: asm_out/ec_reads.lst 2023-05-24T07:09:01.251Z INFO [pg_asm] working directory: asm_out 2023-05-24T07:09:01.251Z INFO [pg_asm::utils] BGN: get_ovlp, input_reads: asm_out/ec_reads.lst : (maxRSS, utime, stime): 88600468 2403 262 2023-05-24T07:09:01.251Z INFO [pg_asm::utils] BGN: bulding sequence database : (maxRSS, utime, stime): 88600468 2403 262 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] create seq db: asm_out/ec_reads.seqdb 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] create seq index: asm_out/ec_reads.idx 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] get input files from: asm_out/ec_reads.lst 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_01.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_01.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_02.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_02.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_03.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_03.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_04.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_04.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_05.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_05.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_06.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_06.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_07.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_07.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_08.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_08.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_09.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_09.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_10.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_10.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_100.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_100.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_101.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_101.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_102.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_102.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_103.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_103.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_104.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_104.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_105.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_105.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_106.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_106.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_107.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_107.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_108.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_108.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_109.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_109.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_11.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_11.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_110.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_110.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_111.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_111.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_112.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_112.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_113.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_113.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_114.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_114.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_115.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_115.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_116.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_116.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_117.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_117.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_118.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_118.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_119.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_119.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_12.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_12.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_120.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_120.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_121.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_121.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_122.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_122.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_123.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_123.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_124.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_124.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_125.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_125.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_126.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_126.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_127.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_127.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_128.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_128.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_13.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_13.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_14.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_14.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_15.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_15.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_16.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_16.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_17.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_17.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_18.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_18.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_19.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_19.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_20.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_20.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_21.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_21.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_22.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_22.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_23.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_23.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_24.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_24.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_25.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_25.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_26.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_26.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_27.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_27.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_28.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_28.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_29.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_29.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_30.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_30.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_31.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_31.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_32.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_32.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_33.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_33.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_34.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_34.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_35.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_35.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_36.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_36.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_37.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_37.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_38.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_38.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_39.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_39.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_40.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_40.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_41.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_41.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_42.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_42.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_43.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_43.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_44.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_44.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_45.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_45.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_46.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_46.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_47.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_47.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_48.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_48.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_49.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_49.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_50.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_50.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_51.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_51.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_52.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_52.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_53.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_53.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_54.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_54.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_55.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_55.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_56.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_56.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_57.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_57.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_58.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_58.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_59.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_59.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_60.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_60.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_61.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_61.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_62.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_62.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_63.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_63.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_64.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_64.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_65.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_65.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_66.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_66.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_67.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_67.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_68.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_68.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_69.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_69.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_70.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_70.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_71.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_71.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_72.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_72.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_73.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_73.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_74.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_74.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_75.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_75.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_76.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_76.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_77.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_77.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_78.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_78.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_79.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_79.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_80.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_80.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_81.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_81.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_82.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_82.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_83.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_83.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_84.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_84.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_85.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_85.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_86.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_86.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_87.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_87.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_88.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_88.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_89.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_89.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_90.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_90.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_91.fa 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_91.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_92.fa 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_92.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_93.fa 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_93.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_94.fa 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_94.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_95.fa 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_95.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_96.fa 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_96.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_97.fa 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_97.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_98.fa 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_98.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_99.fa 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_99.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] total number of reads indexed: 0 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] total number of bases: 0 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] average read length: NaN 2023-05-24T07:09:01.253Z INFO [pg_asm::utils] END: bulding sequence database : (maxRSS, utime, stime): 88600468 2403 262 2023-05-24T07:09:01.255Z INFO [pg_asm::utils] BGN: bulding shimmer : (maxRSS, utime, stime): 88600468 2403 262 thread 'main' panicked at 'called Result::unwrap() on an Err value: Custom { kind: InvalidInput, error: "memory map must have a non-zero length" }', src/bin/utils/build_idx.rs:106:67 note: run with RUST_BACKTRACE=1 environment variable to display a backtrace

[wjq1981]

I get this error when I run peregrine-2021, can you help me to find out why? Thank you very much for your reply!

2023-05-24T06:56:33.690Z INFO [pg_asm] pg_asm peregrine-r 0.4.13 (bioconda release build, linux [x86_64] [rustc 1.58.1 (db9d1b20b 2022-01-20)]) 2023-05-24T06:56:33.691Z INFO [pg_asm] command: pg_asm seq.lst asm_out 2023-05-24T06:56:33.691Z INFO [pg_asm] current dir: /hdd/data/wangjq/Genome/Sorii/01.hifi 2023-05-24T06:56:33.691Z INFO [pg_asm] pg_asm run start 2023-05-24T06:56:33.691Z INFO [pg_asm::utils] BGN: pg_asm : (maxRSS, utime, stime): 3876 0 0 2023-05-24T06:56:33.691Z INFO [pg_asm] pg_asm run parameters: w:80, k:56, r:6, tol:0.01 bestn:6 2023-05-24T06:56:33.691Z INFO [pg_asm] faster mode: false 2023-05-24T06:56:33.691Z INFO [pg_asm] use layout method: 2 2023-05-24T06:56:33.691Z INFO [pg_asm] keep intermediate files: false 2023-05-24T06:56:33.691Z INFO [pg_asm] number of threads: 128 2023-05-24T06:56:33.691Z INFO [pg_asm] number of chunks: 128 2023-05-24T06:56:33.691Z INFO [pg_asm] input read file: seq.lst 2023-05-24T06:56:33.691Z INFO [pg_asm] working directory: asm_out 2023-05-24T06:56:33.691Z INFO [pg_asm] sys: number of physical CPU cores detected: 128 2023-05-24T06:56:34.802Z INFO [pg_asm] sys: total memory: 528150668 KB 2023-05-24T06:56:34.802Z INFO [pg_asm] sys: used memory: 285755728 KB 2023-05-24T06:56:34.802Z INFO [pg_asm] sys: total swap: 52428796 KB 2023-05-24T06:56:34.802Z INFO [pg_asm] sys: used swap: 52427612 KB 2023-05-24T06:56:34.803Z INFO [pg_asm::utils] BGN: get_ovlp, input_reads: seq.lst : (maxRSS, utime, stime): 100968 3 1 2023-05-24T06:56:34.803Z INFO [pg_asm::utils] BGN: bulding sequence database : (maxRSS, utime, stime): 100968 3 1 2023-05-24T06:56:34.803Z INFO [pg_asm::utils::build_sdb] create seq db: asm_out/reads.seqdb 2023-05-24T06:56:34.803Z INFO [pg_asm::utils::build_sdb] create seq index: asm_out/reads.idx 2023-05-24T06:56:34.803Z INFO [pg_asm::utils::build_sdb] get input files from: seq.lst 2023-05-24T06:56:34.803Z INFO [pg_asm::utils::build_sdb] input file: ./dwe.hifi.organelle.fasta.gz 2023-05-24T06:56:34.861Z INFO [pg_asm::utils::build_sdb] input file: ./dwe.hifi.organelle.fasta.gz detected as gz-compressed file 2023-05-24T07:08:21.348Z INFO [pg_asm::utils::build_sdb] total number of reads indexed: 1421240 2023-05-24T07:08:21.348Z INFO [pg_asm::utils::build_sdb] total number of bases: 27637611467 2023-05-24T07:08:21.348Z INFO [pg_asm::utils::build_sdb] average read length: 19446.125 2023-05-24T07:08:21.348Z INFO [pg_asm::utils] END: bulding sequence database : (maxRSS, utime, stime): 61461520 1306 202 2023-05-24T07:08:21.348Z INFO [pg_asm::utils] BGN: bulding shimmer : (maxRSS, utime, stime): 61461520 1306 202 2023-05-24T07:08:48.238Z INFO [pg_asm::utils] END: bulding shimmer : (maxRSS, utime, stime): 88600468 2401 225 2023-05-24T07:08:48.238Z INFO [pg_asm::utils] BGN: overlapping : (maxRSS, utime, stime): 88600468 2401 225 2023-05-24T07:08:49.076Z INFO [pg_asm::utils::ovlp] read_shmmr_index size: 0 2023-05-24T07:08:49.076Z INFO [pg_asm::utils::ovlp] smp_index: 0 2023-05-24T07:08:49.077Z INFO [pg_asm::utils::ovlp] remove 0 singletons from smp_index 2023-05-24T07:08:49.077Z INFO [pg_asm::utils::ovlp] smp_index size updated: 0 2023-05-24T07:08:49.077Z INFO [pg_asm::utils::ovlp] read seq idx: asm_out/reads.seqdb 2023-05-24T07:08:49.925Z INFO [pg_asm::utils::ovlp] read seq db: asm_out/reads.seqdb 2023-05-24T07:08:49.949Z INFO [pg_asm::utils] END: overlapping : (maxRSS, utime, stime): 88600468 2402 253 2023-05-24T07:08:49.949Z INFO [pg_asm::utils] END: get_ovlp - input_reads: seq.lst : (maxRSS, utime, stime): 88600468 2402 253 2023-05-24T07:08:50.061Z INFO [pg_asm::utils] BGN: ovlp_ec : (maxRSS, utime, stime): 88600468 2402 253 2023-05-24T07:08:50.061Z INFO [pg_asm::utils::ovlp_ec] read seq idx: asm_out/reads.seqdb 2023-05-24T07:08:51.034Z INFO [pg_asm::utils::ovlp_ec] read seq db: asm_out/reads.seqdb 2023-05-24T07:08:51.034Z INFO [pg_asm::utils::ovlp_ec] prefix: asm_out/reads-ovlp 2023-05-24T07:08:51.034Z INFO [pg_asm::utils::ovlp_ec] out_prefix: asm_out/ec_read 2023-05-24T07:08:51.099Z INFO [pg_asm::utils] END: ovlp_ec : (maxRSS, utime, stime): 88600468 2403 253 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.01 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.02 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.03 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.04 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.05 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.06 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.07 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.08 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.09 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.10 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.100 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.101 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.102 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.103 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.104 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.105 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.106 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.107 2023-05-24T07:08:51.100Z INFO [pg_asm] remove asm_out/reads-ovlp.108 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.109 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.11 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.110 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.111 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.112 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.113 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.114 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.115 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.116 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.117 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.118 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.119 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.12 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.120 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.121 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.122 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.123 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.124 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.125 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.126 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.127 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.128 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.13 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.14 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.15 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.16 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.17 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.18 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.19 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.20 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.21 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.22 2023-05-24T07:08:51.101Z INFO [pg_asm] remove asm_out/reads-ovlp.23 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.24 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.25 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.26 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.27 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.28 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.29 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.30 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.31 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.32 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.33 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.34 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.35 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.36 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.37 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.38 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.39 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.40 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.41 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.42 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.43 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.44 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.45 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.46 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.47 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.48 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.49 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.50 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.51 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.52 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.53 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.54 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.55 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.56 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.57 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.58 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.59 2023-05-24T07:08:51.102Z INFO [pg_asm] remove asm_out/reads-ovlp.60 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.61 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.62 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.63 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.64 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.65 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.66 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.67 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.68 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.69 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.70 2023-05-24T07:08:51.103Z INFO [pg_asm] remove asm_out/reads-ovlp.71 2023-05-24T07:08:51.103Z 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asm_out/reads-shmr-23-of-128.dat 2023-05-24T07:08:51.820Z INFO [pg_asm] remove asm_out/reads-shmr-24-of-128.dat 2023-05-24T07:08:51.822Z INFO [pg_asm] remove asm_out/reads-shmr-25-of-128.dat 2023-05-24T07:08:51.825Z INFO [pg_asm] remove asm_out/reads-shmr-26-of-128.dat 2023-05-24T07:08:51.828Z INFO [pg_asm] remove asm_out/reads-shmr-27-of-128.dat 2023-05-24T07:08:51.832Z INFO [pg_asm] remove asm_out/reads-shmr-28-of-128.dat 2023-05-24T07:08:51.835Z INFO [pg_asm] remove asm_out/reads-shmr-29-of-128.dat 2023-05-24T07:08:51.837Z INFO [pg_asm] remove asm_out/reads-shmr-30-of-128.dat 2023-05-24T07:08:52.215Z INFO [pg_asm] remove asm_out/reads-shmr-31-of-128.dat 2023-05-24T07:08:52.218Z INFO [pg_asm] remove asm_out/reads-shmr-32-of-128.dat 2023-05-24T07:08:52.221Z INFO [pg_asm] remove asm_out/reads-shmr-33-of-128.dat 2023-05-24T07:08:52.223Z INFO [pg_asm] remove asm_out/reads-shmr-34-of-128.dat 2023-05-24T07:08:52.226Z INFO [pg_asm] remove asm_out/reads-shmr-35-of-128.dat 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asm_out/reads-shmr-48-of-128.dat 2023-05-24T07:08:52.256Z INFO [pg_asm] remove asm_out/reads-shmr-49-of-128.dat 2023-05-24T07:08:52.258Z INFO [pg_asm] remove asm_out/reads-shmr-50-of-128.dat 2023-05-24T07:08:52.260Z INFO [pg_asm] remove asm_out/reads-shmr-51-of-128.dat 2023-05-24T07:08:52.262Z INFO [pg_asm] remove asm_out/reads-shmr-52-of-128.dat 2023-05-24T07:08:52.453Z INFO [pg_asm] remove asm_out/reads-shmr-53-of-128.dat 2023-05-24T07:08:52.456Z INFO [pg_asm] remove asm_out/reads-shmr-54-of-128.dat 2023-05-24T07:08:52.458Z INFO [pg_asm] remove asm_out/reads-shmr-55-of-128.dat 2023-05-24T07:08:52.461Z INFO [pg_asm] remove asm_out/reads-shmr-56-of-128.dat 2023-05-24T07:08:52.463Z INFO [pg_asm] remove asm_out/reads-shmr-57-of-128.dat 2023-05-24T07:08:52.465Z INFO [pg_asm] remove asm_out/reads-shmr-58-of-128.dat 2023-05-24T07:08:52.468Z INFO [pg_asm] remove asm_out/reads-shmr-59-of-128.dat 2023-05-24T07:08:52.470Z INFO [pg_asm] remove asm_out/reads-shmr-60-of-128.dat 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asm_out/reads-shmr-73-of-128.dat 2023-05-24T07:08:52.539Z INFO [pg_asm] remove asm_out/reads-shmr-74-of-128.dat 2023-05-24T07:08:52.541Z INFO [pg_asm] remove asm_out/reads-shmr-75-of-128.dat 2023-05-24T07:08:52.544Z INFO [pg_asm] remove asm_out/reads-shmr-76-of-128.dat 2023-05-24T07:08:52.546Z INFO [pg_asm] remove asm_out/reads-shmr-77-of-128.dat 2023-05-24T07:08:52.548Z INFO [pg_asm] remove asm_out/reads-shmr-78-of-128.dat 2023-05-24T07:08:52.552Z INFO [pg_asm] remove asm_out/reads-shmr-79-of-128.dat 2023-05-24T07:08:52.555Z INFO [pg_asm] remove asm_out/reads-shmr-80-of-128.dat 2023-05-24T07:08:52.557Z INFO [pg_asm] remove asm_out/reads-shmr-81-of-128.dat 2023-05-24T07:08:52.560Z INFO [pg_asm] remove asm_out/reads-shmr-82-of-128.dat 2023-05-24T07:08:52.563Z INFO [pg_asm] remove asm_out/reads-shmr-83-of-128.dat 2023-05-24T07:08:52.566Z INFO [pg_asm] remove asm_out/reads-shmr-84-of-128.dat 2023-05-24T07:08:52.568Z INFO [pg_asm] remove asm_out/reads-shmr-85-of-128.dat 2023-05-24T07:08:52.570Z INFO [pg_asm] remove asm_out/reads-shmr-86-of-128.dat 2023-05-24T07:08:52.572Z INFO [pg_asm] remove asm_out/reads-shmr-87-of-128.dat 2023-05-24T07:08:52.575Z INFO [pg_asm] remove asm_out/reads-shmr-88-of-128.dat 2023-05-24T07:08:52.577Z INFO [pg_asm] remove asm_out/reads-shmr-89-of-128.dat 2023-05-24T07:08:52.580Z INFO [pg_asm] remove asm_out/reads-shmr-90-of-128.dat 2023-05-24T07:08:52.583Z INFO [pg_asm] remove asm_out/reads-shmr-91-of-128.dat 2023-05-24T07:08:52.585Z INFO [pg_asm] remove asm_out/reads-shmr-92-of-128.dat 2023-05-24T07:08:52.587Z INFO [pg_asm] remove asm_out/reads-shmr-93-of-128.dat 2023-05-24T07:08:52.590Z INFO [pg_asm] remove asm_out/reads-shmr-94-of-128.dat 2023-05-24T07:08:52.592Z INFO [pg_asm] remove asm_out/reads-shmr-95-of-128.dat 2023-05-24T07:08:52.595Z INFO [pg_asm] remove asm_out/reads-shmr-96-of-128.dat 2023-05-24T07:08:52.597Z INFO [pg_asm] remove asm_out/reads-shmr-97-of-128.dat 2023-05-24T07:08:52.599Z INFO [pg_asm] remove asm_out/reads-shmr-98-of-128.dat 2023-05-24T07:08:52.602Z INFO [pg_asm] remove asm_out/reads-shmr-99-of-128.dat 2023-05-24T07:09:01.199Z INFO [pg_asm] remove asm_out/reads.seqdb 2023-05-24T07:09:01.249Z INFO [pg_asm] remove asm_out/reads.idx 2023-05-24T07:09:01.251Z INFO [pg_asm] input reads: asm_out/ec_reads.lst 2023-05-24T07:09:01.251Z INFO [pg_asm] working directory: asm_out 2023-05-24T07:09:01.251Z INFO [pg_asm::utils] BGN: get_ovlp, input_reads: asm_out/ec_reads.lst : (maxRSS, utime, stime): 88600468 2403 262 2023-05-24T07:09:01.251Z INFO [pg_asm::utils] BGN: bulding sequence database : (maxRSS, utime, stime): 88600468 2403 262 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] create seq db: asm_out/ec_reads.seqdb 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] create seq index: asm_out/ec_reads.idx 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] get input files from: asm_out/ec_reads.lst 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_01.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_01.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_02.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_02.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_03.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_03.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_04.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_04.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_05.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_05.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_06.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_06.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_07.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_07.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_08.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_08.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_09.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_09.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_10.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_10.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_100.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_100.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_101.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_101.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_102.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_102.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_103.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_103.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_104.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_104.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_105.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_105.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_106.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_106.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_107.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_107.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_108.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_108.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_109.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_109.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_11.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_11.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_110.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_110.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_111.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_111.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_112.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_112.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_113.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_113.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_114.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_114.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_115.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_115.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_116.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_116.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_117.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_117.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_118.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_118.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_119.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_119.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_12.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_12.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_120.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_120.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_121.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_121.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_122.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_122.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_123.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_123.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_124.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_124.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_125.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_125.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_126.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_126.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_127.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_127.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_128.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_128.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_13.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_13.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_14.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_14.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_15.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_15.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_16.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_16.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_17.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_17.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_18.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_18.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_19.fa 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_19.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.251Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_20.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_20.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_21.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_21.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_22.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_22.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_23.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_23.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_24.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_24.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_25.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_25.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_26.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_26.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_27.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_27.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_28.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_28.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_29.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_29.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_30.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_30.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_31.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_31.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_32.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_32.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_33.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_33.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_34.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_34.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_35.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_35.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_36.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_36.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_37.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_37.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_38.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_38.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_39.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_39.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_40.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_40.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_41.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_41.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_42.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_42.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_43.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_43.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_44.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_44.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_45.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_45.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_46.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_46.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_47.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_47.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_48.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_48.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_49.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_49.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_50.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_50.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_51.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_51.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_52.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_52.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_53.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_53.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_54.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_54.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_55.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_55.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_56.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_56.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_57.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_57.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_58.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_58.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_59.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_59.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_60.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_60.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_61.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_61.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_62.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_62.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_63.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_63.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_64.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_64.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_65.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_65.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_66.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_66.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_67.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_67.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_68.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_68.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_69.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_69.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_70.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_70.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_71.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_71.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_72.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_72.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_73.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_73.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_74.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_74.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_75.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_75.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_76.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_76.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_77.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_77.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_78.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_78.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_79.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_79.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_80.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_80.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_81.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_81.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_82.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_82.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_83.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_83.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_84.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_84.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_85.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_85.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_86.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_86.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_87.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_87.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_88.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_88.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_89.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_89.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_90.fa 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_90.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.252Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_91.fa 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_91.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_92.fa 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_92.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_93.fa 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_93.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_94.fa 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_94.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_95.fa 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_95.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_96.fa 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_96.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_97.fa 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_97.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_98.fa 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_98.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_99.fa 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] input file: asm_out/ec_read_99.fa may not be proper input file (filesize = 0), ignore 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] total number of reads indexed: 0 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] total number of bases: 0 2023-05-24T07:09:01.253Z INFO [pg_asm::utils::build_sdb] average read length: NaN 2023-05-24T07:09:01.253Z INFO [pg_asm::utils] END: bulding sequence database : (maxRSS, utime, stime): 88600468 2403 262 2023-05-24T07:09:01.255Z INFO [pg_asm::utils] BGN: bulding shimmer : (maxRSS, utime, stime): 88600468 2403 262 thread 'main' panicked at 'called Result::unwrap() on an Err value: Custom { kind: InvalidInput, error: "memory map must have a non-zero length" }', src/bin/utils/build_idx.rs:106:67 note: run with RUST_BACKTRACE=1 environment variable to display a backtrace

[MarinePoullet]

Hi, Since I am facing the exact same error while testing peregrine-r 0.4.11 : "memory map must have a non-zero length", I am trying to ask directly on this post. Instead of opening and reading the index file ".dat" then giving the read_shmmr_index size, this step is not working and then the read_shmmr_index size is equal to 0. The following steps are then not working.

I am running my job on a cluster. This is the command I am using :

!/bin/bash

SBATCH -p workq

SBATCH -c 24

SBATCH --mem=200G

module load bioinfo/Peregrine/2021-0.4.11

pg_asm --bestn 8 input_read folder_output >& log_output

Would it be possible to know how to fix this ?

[wjq1981]

Hi, Since I am facing the exact same error while testing peregrine-r 0.4.11 : "memory map must have a non-zero length", I am trying to ask directly on this post. Instead of opening and reading the index file ".dat" then giving the read_shmmr_index size, this step is not working and then the read_shmmr_index size is equal to 0. The following steps are then not working.

I am running my job on a cluster. This is the command I am using : #!/bin/bash #SBATCH -p workq #SBATCH -c 24 #SBATCH --mem=200G module load bioinfo/Peregrine/2021-0.4.11

pg_asm --bestn 8 input_read folder_output >& log_output

Would it be possible to know how to fix this ?

I haven't solved the problem, we're already using hifi data.

[MarinePoullet]

Hi, Since I am facing the same error while testing peregrine-r 0.4.11: "memory map must have a non-zero length", I am trying to ask directly on this post. Instead of opening and reading the index file ".dat" and then giving the read_shmmr_index size, this step is not working and then the read_shmmr_index size is equal to 0. The following steps are then not working. I am running my job on a cluster. This is the command I am using : #!/bin/bash #SBATCH -p workq #SBATCH -c 24 #SBATCH --mem=200G module load bioinfo/Peregrine/2021-0.4.11 pg_asm --bestn 8 input_read folder_output >& log_output Would it be possible to know how to fix this?

I haven't solved the problem, we're already using hifi data.

Ho, that's unfortunate. Thanks for your reply!

[jelber2]

Have you tried hifiasm or LJA or mbg (all PacBio HiFi compatible de novo assemblers). My thoughts are that there is something going on with your HiFi reads, and you will get "bad" results from other assemblers too.

[wjq1981]

From the genomes I've assembled so far, hifiasm or nextdenovo have already assembled to solve this "bad" problem, I think. Of course there are other software to assemble hifi data, but in comparison, hifiasm or nextdenovo is more suitable for my data.