search

csiro-crop-informatics / biokanga_align_paper

0 stars 0 forks source link

Report locations of aligned reads along chromosomes #4

Open rsuchecki opened 6 years ago

rsuchecki commented 6 years ago

This should allow us to identify hot-spots where some aligners tend to incorrectly place reads. The required information is already generated https://github.com/csiro-crop-informatics/biokanga_align_paper/blob/bfa0663851c62934f40cda7d6274d9e966ab9d04/main.nf#L355

but in addition to summarising the results we should plot the raw info along chromosomes. Perhaps as density.

rsuchecki commented 6 years ago

Leaving open until plotting and/or automated identification of regions of interest finalised