csmiller EMIRGE issues - Githubissues

csmiller / EMIRGE

EMIRGE reconstructs full length ribosomal genes from short read sequencing data.

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issues

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emirge_makedb.py add regex to allow for Silva `SSURef_N[Rr]99_tax...`

#41 mlhoggard opened 4 years ago
0
usearchtovsearch

#40 jgolob opened 6 years ago
3
Is this a live project?

#39 tseemann closed 6 years ago
1
IndexError: Out of bounds on buffer access (axis 0)

#38 Arkadiy-Garber opened 6 years ago
1
Fix for the "Illegal header line in fasta file" error.

#37 danillo-alvarenga opened 7 years ago
0
Bowtie 1.2 breaks `emirge`

#36 andersgs opened 7 years ago
1
EMIRGE exit without an error message after completing iteration 0.

#35 ETaSky opened 7 years ago
1
emirge_makedb.py: please add an argument-option for providing pre-downloaded SILVA-db

#34 jvollme opened 7 years ago
2
EMIRGE compatible with bowtie v.1+ ?

#33 jvollme closed 7 years ago
2
Trouble resuming from completed iteration

#32 ppericard opened 7 years ago
0
techical difference between emirge and emirge_amplicon

#31 yxxue opened 7 years ago
0
Unexpected crash at 17th iteration

#30 ppericard opened 8 years ago
2
Candidate db file dead link

#29 ppericard closed 8 years ago
1
EMIRGE method choice

#28 domenico-simone closed 8 years ago
1
IndexError: Out of bounds on buffer access (axis 1)

#27 rbeinart opened 8 years ago
7
incompatiblility of emirge_rename_fasta.py with new version of biopython?

#26 rmueller35 closed 8 years ago
1
Fixed vsearch version issue, and sorting of reads

#25 andersgs closed 4 years ago
2
Inordinate memory usage

#24 cmorganl closed 8 years ago
5
got errors when running emirge_amplicon.py

#23 yxxue closed 8 years ago
5
Travis updates

#22 epruesse closed 8 years ago
0
merge

#21 epruesse closed 8 years ago
0
setup travis

#20 epruesse closed 8 years ago
0
EMIRGE Amplicon: n_alignments not intialized

#19 TheOneHyer closed 8 years ago
1
EMIRGE dependencies

#18 aslett1 closed 8 years ago
3
Use setuptools to simplify installation

#17 JMBattista closed 8 years ago
1
Can EMIRGE work with FASTA files?

#16 audy closed 8 years ago
2
Crash in Emirge amplicon

#15 ctSkennerton closed 8 years ago
4
Segmentation fault error

#14 kgwin1 closed 8 years ago
0
Error IndexError: index 1399 out of bounds 0<=index<0

#13 kgwin1 closed 11 years ago
1
ENH Better error messages

#12 luispedro closed 11 years ago
1
BLD Ignore built files/directories

#11 luispedro closed 11 years ago
0
Reporting base probabilities in reconstructed sequences

#10 csmiller opened 11 years ago
0
EMIRGE should exit more gracefully if 0 sequences are reconstructed

#9 csmiller opened 12 years ago
3
Non-paired end data

#8 fangly closed 12 years ago
2
EMIRGE presets and environmental variable defaults

#7 csmiller opened 12 years ago
0
EMIRGE should work with SOLiD / colorspace reads

#6 csmiller closed 8 years ago
0
EMIRGE should work with single-end data

#5 csmiller closed 13 years ago
0
multithreading the non-mapping calculations

#4 csmiller opened 13 years ago
0
move to usearch v4

#3 csmiller closed 13 years ago
0
reduce memory usage via sparse matrices

#2 csmiller closed 13 years ago
0
EMIRGE should be indel-aware, and work with 454 reads.

#1 csmiller opened 13 years ago
0