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cyclus / cymetric

http://fuelcycle.org/user/cymetric/index.html
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Nose test fails. Calling python2.7 despite it not being on my machine and nose was installed with pip. #183

Closed DanJack1987 closed 12 months ago

DanJack1987 commented 2 years ago

daniel@ubuntu:~/cymetric$ nosetests -w tests/ EEEEEEE

ERROR: Failure: ImportError (No module named cyclus)

Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in loadTestsFromName addr.filename, addr.module) File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/home/daniel/cymetric/tests/test_cyclus.py", line 9, in from tools import setup, dbtest File "/home/daniel/cymetric/tests/tools.py", line 7, in from cyclus import lib ImportError: No module named cyclus

====================================================================== ERROR: Failure: ImportError (No module named cymetric)

Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in loadTestsFromName addr.filename, addr.module) File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/home/daniel/cymetric/tests/test_evaluator.py", line 7, in from cymetric import evaluator ImportError: No module named cymetric

====================================================================== ERROR: Failure: ImportError (No module named numpy)

Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in loadTestsFromName addr.filename, addr.module) File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/home/daniel/cymetric/tests/test_fco_metrics.py", line 9, in import numpy as np ImportError: No module named numpy

====================================================================== ERROR: Failure: ImportError (No module named numpy)

Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in loadTestsFromName addr.filename, addr.module) File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/home/daniel/cymetric/tests/test_filters.py", line 11, in import numpy as np ImportError: No module named numpy

====================================================================== ERROR: Failure: ImportError (No module named numpy)

Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in loadTestsFromName addr.filename, addr.module) File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/home/daniel/cymetric/tests/test_metrics.py", line 12, in import numpy as np ImportError: No module named numpy

====================================================================== ERROR: Failure: ImportError (No module named cymetric)

Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in loadTestsFromName addr.filename, addr.module) File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/home/daniel/cymetric/tests/test_root_metrics.py", line 10, in from cymetric import root_metrics ImportError: No module named cymetric

====================================================================== ERROR: Failure: ImportError (No module named numpy)

Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in loadTestsFromName addr.filename, addr.module) File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/home/daniel/cymetric/tests/test_timeseries.py", line 12, in import numpy as np ImportError: No module named numpy

Ran 7 tests in 0.049s

bam241 commented 2 years ago

you need to install cyclus first, or to add the cyclus install location (the one containing the Python package) in your PYTHONPATH.

you can find more detail here: http://fuelcycle.org and https://github.com/cyclus/cycus

bam241 commented 2 years ago

btw: File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in loadTestsFromName this mean you have a problem in the /usr/lib/python2.7/dist-packages/nose/loader.py file so you do have some things related to Python 2.7 installed on your machine.

DanJack1987 commented 2 years ago

This is a fresh virtual machine. I have only installed Cyclus, cycamore and cymetric on it as well as dependencies. If I check alternatives python3 is the only option. I believe I did add Cyclus to my python path already. Is there a way to check that?

bam241 commented 2 years ago

the problem might come be from nose, I am wondering if pip is not installing python 2.7 package.

Things you can try:

DanJack1987 commented 2 years ago

when I try echo $PYTHONPATH I get nothing.

pip --version pip 20.0.2 from /usr/lib/python3/dist-packages/pip (python 3.8)

from cyclus import lib doesn't return any errors just gives me a new line.

bam241 commented 2 years ago

I believe your problem comes from nose. How did you install it. It seems that you have installed a python2 version of nosetest

bennibbelink commented 12 months ago

Cymetric has been updated to use pytest instead of nose (#187), also based on the conversation there might have been incompatible versions of nose and python being used.

@gonuke can this issue be closed?

gonuke commented 12 months ago

Closing since our software stack has advanced substantially - please reopen or open a new issue if failures return.