czbiohub-sf / shrimPy

shrimPy: Smart High-throughput Robust Imaging & Measurement in Python
BSD 3-Clause "New" or "Revised" License
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Merging autotracker #156

Open edyoshikun opened 3 months ago

edyoshikun commented 3 months ago

This PR adds autotracker (smart microscopy) tool into shirmPy.

For this PR, I hope to accomplish the following:

Part 1:

Part 2:

Part 3:

edyoshikun commented 3 months ago

@ieivanov so far this works using the demo.cfg in automaton. I am providing some fake calculated shifts and added a sleep()to resemble the actual tracking methods calculating the shifts.

When you review this, I would like feedback on:

As a side note, I am thinking a bit ahead and making sure this can be used only with one arm either lf or ls.