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dahak-metagenomics
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dahak-taco
🌮 Taco is an experimental command line interface for dahak workflows. https://dahak-metagenomics.github.io/dahak-taco
BSD 3-Clause "New" or "Revised" License
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User narrative
#28
charlesreid1
opened
6 years ago
3
Integration (or not?) with dahak-bespin
#27
charlesreid1
opened
6 years ago
0
Quality engineering plan
#26
charlesreid1
opened
6 years ago
1
taco locations
#25
charlesreid1
opened
6 years ago
3
Parameter presets
#24
charlesreid1
opened
6 years ago
2
Add a caboose
#23
charlesreid1
opened
6 years ago
0
Clarify branching model
#22
charlesreid1
opened
6 years ago
2
Include rules for intermediate steps? (Closed: everything rule only)
#21
charlesreid1
closed
6 years ago
1
Screenshot of usage in documentation
#20
charlesreid1
opened
6 years ago
2
Why separate config and parameter files?
#19
charlesreid1
closed
6 years ago
1
What happens if Snakemake has conda directives but no conda installed?
#18
charlesreid1
closed
6 years ago
1
ghost Snakemake all rules
#17
charlesreid1
closed
6 years ago
2
Singularity/docker directives
#16
charlesreid1
closed
6 years ago
4
Adjust requirements and setup.py required packages
#15
charlesreid1
opened
6 years ago
5
Autodetect JSON or YAML
#14
charlesreid1
opened
6 years ago
3
Cut down on redundancy
#13
charlesreid1
opened
6 years ago
0
Add a validate verb
#12
charlesreid1
opened
6 years ago
0
Utility to assist user in creating configurations from defaults
#11
charlesreid1
opened
6 years ago
1
Print output locations
#10
charlesreid1
opened
6 years ago
2
Improve command line interface
#9
charlesreid1
opened
6 years ago
2
Implement a cloud/URL model for getting rules
#8
charlesreid1
opened
6 years ago
0
Improve output of taco ls
#7
charlesreid1
opened
6 years ago
0
Overlay model: workflows + metadata
#6
charlesreid1
opened
6 years ago
0
top-level webpage for dahak-metagenomics?
#5
johnsolk
closed
6 years ago
2
snakemake not installing with pip install dahak_taco
#4
johnsolk
closed
6 years ago
1
use_local not defined
#3
SichongP
closed
6 years ago
2
Links are broken in walkthrough github page
#2
SichongP
closed
6 years ago
1
Enable user specification of rank in filter_taxa.rule
#1
brooksph
closed
6 years ago
3