Open dancoster opened 1 year ago
hirid_sig_med_lab_pairs_pval_non_vital_signs.csv
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: hirid_sig_med_lab_pairs_hard_non_vital_signs.csvhirid_sig_med_lab_pairs_pval_ratio_non_vital_signs.csv
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: hirid_sig_med_lab_pairs_hard_ratio_non_vital_signs.csv(1) Why there is only 12 measurements:
Heart rate
Respiratory rate
Core body temperature
Peripheral oxygen saturation
Calcium.ionized [Moles/volume] in Blood
Carboxyhemoglobin/Hemoglobin.total in Arterial blood
Glucose [Moles/volume] in Serum or Plasma
Hemoglobin [Mass/volume] in Arterial blood
Methemoglobin/Hemoglobin.total in Arterial blood
Potassium [Moles/volume] in Blood
Sodium [Moles/volume] in Blood
Hemoglobin [Mass/volume] in Blood
(2) Why ' Metronidazole tabl 200 mg' is consider a 'lab_name'? (It's a drug)
300
variable id associated with both Respiratory rate
and Metronidazole table 200 mg
. I have temporarily removed 300
variable id.Please check how we can display (writing to a log file) the progress of the script.
1) Before running discovery analysis - review Ricu package and improve HIRID_MAPPING: https://cran.r-project.org/web/packages/ricu/ricu.pdf and map per each of the lab tests in MIMIC the same lab test in HiRid.
2) Run HiRiD discovery
3) Explore how can we match medications between HiRid and MIMIC (ATC5).