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databio
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GenomicDistributions
Calculate and plot distributions of genomic ranges
http://code.databio.org/GenomicDistributions
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getTssFromGTF
#209
Shukla04
closed
1 week ago
3
Error installing GenomicDistributionsData
#208
nsheff
closed
9 months ago
3
Dev
#207
kkupkova
closed
1 year ago
0
Custom partitions for a custom reference
#206
rrashford
closed
1 year ago
3
Trying to use calcChromBinsRef for a custom genome fails
#205
aminakur
closed
1 year ago
5
new release version bump
#204
kkupkova
closed
1 year ago
0
add citation file
#203
kkupkova
closed
2 years ago
0
catch up with master
#202
kkupkova
closed
2 years ago
0
Determining which regions were labeled with each partition name
#201
rrashford
opened
2 years ago
1
v 1.5.5 build warning fix
#200
kkupkova
closed
2 years ago
0
bug fix - partition list
#199
kkupkova
closed
2 years ago
1
v1.5.3: bug fixes
#198
kkupkova
closed
2 years ago
0
v1.5.2
#197
kkupkova
closed
2 years ago
0
mm10 genome not available in GenomicDistributions or ExperimentHub
#196
rrashford
closed
2 years ago
3
1.5.1 bug fix in calcSummarySignal for mm10
#195
kkupkova
closed
2 years ago
0
get up to date with master after biocondutor update
#194
kkupkova
closed
2 years ago
0
corrected vignette
#193
kkupkova
closed
2 years ago
0
v1.3.5
#192
kkupkova
closed
2 years ago
0
v1.3.4
#191
kkupkova
closed
2 years ago
0
Support for organisms such as Plasmodium Falciparum with gffs/gtfs that dont have 'gene_biotype' in the 9th column
#190
JesseRop
closed
2 years ago
5
Genomic partitions plot frequencies not per set
#189
ChristelKrueger
closed
2 years ago
2
Release
#188
nsheff
closed
2 years ago
0
CFRIF updates
#187
nsheff
closed
2 years ago
1
increase version number - correct
#186
kkupkova
closed
2 years ago
0
Update full-power.Rmd
#185
kkupkova
closed
2 years ago
0
1.3.1 update NEWS
#184
kkupkova
closed
2 years ago
0
Version 1.3.1
#183
kkupkova
closed
2 years ago
0
Dev jose
#182
joseverdezoto
closed
2 years ago
0
Dev jose
#181
joseverdezoto
closed
2 years ago
0
make an option to plot different datasets by different colors
#180
kkupkova
opened
2 years ago
3
in plotQTHist, numbers param doesn't always work
#179
nsheff
closed
2 years ago
4
plotQTHist quantile param name
#178
nsheff
closed
2 years ago
0
Confusion about branches
#177
nsheff
closed
2 years ago
1
Deprecation warning
#176
nsheff
closed
2 years ago
2
Build reference data examples require too large of downloads.
#175
nsheff
closed
2 years ago
2
Assignment operator
#174
nsheff
closed
2 years ago
1
Distance to TSSs is wrong
#173
nsheff
closed
2 years ago
5
Nearest Genes Function
#172
nleroy917
opened
2 years ago
28
plotChromBins - option to change limit of y-axes
#171
tgstoecker
closed
2 years ago
2
Nearest Genes Function
#170
nleroy917
closed
2 years ago
3
Add corrected neighbor dist, nearestNeighbors, doc changes
#169
joseverdezoto
closed
2 years ago
0
Add calcNearestGenes Function
#168
nleroy917
closed
2 years ago
13
mm10 specificity plots
#167
kkupkova
closed
3 years ago
0
update documentation
#166
kkupkova
closed
3 years ago
0
remove all bpProportion=T examples to avoid build error
#165
kkupkova
closed
3 years ago
0
one more bioconductor windows build fix
#164
kkupkova
closed
3 years ago
0
fix build error on Windows (Bioconductor issue only)
#163
kkupkova
closed
3 years ago
0
v1.1.5
#162
kkupkova
closed
3 years ago
0
nicer dinuc. plots and avoid build error in Bioconductor
#161
kkupkova
closed
3 years ago
0
update vignettes, typo
#160
kkupkova
closed
3 years ago
0
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