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databio
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bedboss
Python pipeline for processing BED files for BEDbase
https://docs.bedbase.org
BSD 2-Clause "Simplified" License
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Release 0.4.0
#73
khoroshevskyi
closed
5 days ago
0
added bbuploader
#71
khoroshevskyi
closed
5 days ago
0
New line character at the end of https://api.bedbase.org/openapi.json
#70
jwokaty
opened
1 week ago
0
Next steps
#69
khoroshevskyi
opened
2 weeks ago
0
Avoiding 403s
#68
jwokaty
closed
2 weeks ago
1
Dev bedclassifier script
#67
donaldcampbelljr
closed
3 months ago
2
Add license field to uploading bed files
#66
khoroshevskyi
closed
5 days ago
1
Add uploading bed tokens
#65
khoroshevskyi
closed
5 days ago
1
Add function for uploading bed tokens
#64
khoroshevskyi
closed
5 days ago
1
release 0.3.0
#63
khoroshevskyi
closed
1 week ago
0
Should we standardize bed files?
#62
khoroshevskyi
opened
4 months ago
2
Release 0.2.1
#61
khoroshevskyi
closed
4 months ago
0
Improve BED Classifier
#60
donaldcampbelljr
opened
4 months ago
2
Where should metadata live?
#58
khoroshevskyi
opened
4 months ago
1
v0.2.0
#57
khoroshevskyi
closed
4 months ago
0
New bbconf
#56
khoroshevskyi
closed
4 months ago
0
bedset - create new statistics and metadata
#55
khoroshevskyi
opened
5 months ago
0
Update cli
#53
khoroshevskyi
closed
4 months ago
1
Bed cache
#52
khoroshevskyi
closed
4 months ago
0
Update qdrant
#51
khoroshevskyi
closed
4 months ago
2
Update bedset
#50
khoroshevskyi
closed
4 months ago
1
Add S3 upload check if file exists in the bucket
#49
khoroshevskyi
closed
4 months ago
1
integrate populator repository
#72
nsheff
closed
5 days ago
2
Clean bedstat
#46
khoroshevskyi
closed
4 months ago
0
Update README.md
#45
khoroshevskyi
closed
6 months ago
0
Restructuring
#44
khoroshevskyi
closed
6 months ago
0
Check if bedboss is producing correct digest
#43
khoroshevskyi
closed
4 months ago
1
improve bedqc error raising
#42
khoroshevskyi
closed
6 months ago
0
clean up CLI of bedboss
#41
khoroshevskyi
closed
6 months ago
0
Restructuring
#40
khoroshevskyi
closed
6 months ago
0
Update bed classifier
#39
donaldcampbelljr
closed
6 months ago
1
Bed files and statistics should be named according to their digest.
#38
khoroshevskyi
closed
4 months ago
1
regionstat.R should be more verbose if it cannot find the BSGenome package used for calculating and plotting GC content
#37
donaldcampbelljr
opened
6 months ago
1
bedboss should use bbclient!
#36
khoroshevskyi
closed
4 months ago
2
Add Bed Classifier
#35
donaldcampbelljr
closed
6 months ago
1
Allow uploading meta data from input pep to an output pep via registry path
#33
donaldcampbelljr
closed
6 months ago
1
Use pephubclient to create new bedset, as View
#32
khoroshevskyi
closed
6 months ago
0
Use pephubclient to upload bed metadata as PEP sample
#31
khoroshevskyi
closed
5 months ago
4
All pytest currently errors with: OSError: [Errno 29] Illegal seek
#30
donaldcampbelljr
closed
6 months ago
2
Bedbase PEP schema in pephub
#29
khoroshevskyi
closed
5 months ago
10
bedbuncher: Calculate bedset statistics (mean and sd) without downloading files
#28
khoroshevskyi
closed
4 months ago
1
add bedboss tests
#27
khoroshevskyi
closed
5 days ago
1
Specify different flavors of BED
#34
nsheff
closed
4 months ago
20
Create package that will project (store) information about s3 storage
#26
khoroshevskyi
closed
5 months ago
3
Add checking Refgenie in env vars
#25
khoroshevskyi
closed
6 months ago
0
Add documentation
#24
khoroshevskyi
closed
2 weeks ago
1
install checker is too slow with R packages
#23
nsheff
opened
9 months ago
0
Add pephub, as online source for bedboss-all and stats
#22
khoroshevskyi
closed
5 months ago
1
Release v0.1.0
#21
khoroshevskyi
closed
6 months ago
1
Add bedbuncher to bedboss
#20
khoroshevskyi
closed
6 months ago
0
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