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databio / pepatac

A modular, containerized pipeline for ATAC-seq data processing
http://pepatac.databio.org
BSD 2-Clause "Simplified" License
54 stars 15 forks source link

Conda install issues #206

Closed gbloeb closed 3 years ago

gbloeb commented 3 years ago

Have tried conda install onto multiple systems and conflicts prevented creation of environment:

(base) Gabriels-iMac:pepatac gloeb$ conda env create -f requirements-conda.yml

Collecting package metadata (repodata.json): done
Solving environment: | 
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
failed                                                                                                                                                                                                                                                          | 

UnsatisfiableError: The following specifications were found to be incompatible with each other:                                                                                                                                                                    

Package python_abi conflicts for:
cython[version='>=0.29'] -> python_abi[version='2.7.*|3.6.*|3.7.*|3.8.*|3.9.*|3.6|3.7',build='*_cp39|*_cp38|*_cp37m|*_cp36m|*_cp27m|*_pypy36_pp73|*_pypy37_pp73']
pytest-runner -> pytest -> python_abi[version='3.6|3.6.*|3.7.*|3.8.*|3.9.*|3.7',build='*_pypy37_pp73|*_cp38|*_cp36m|*_cp37m|*_cp39|*_pypy36_pp73']
python[version='>=3.8'] -> pip -> setuptools -> python_abi[version='3.8.*|3.9.*',build='*_cp38|*_cp39']
r-ggplot2 -> r-base[version='>=4.0,<4.1.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38]
pysam[version='>=0.13'] -> python_abi[version='2.7.*|3.6.*|3.7.*|3.8.*|3.9.*',build='*_cp39|*_cp38|*_cp37m|*_cp36m|*_cp27m']
r-base[version='>=4.0.3'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> python_abi[version='3.6|3.7',build='*_pypy37_pp73|*_pypy36_pp73']
bioconductor-genomicranges -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi=2.7[build=*_cp27m]
r-gplots -> r-base[version='>=4.0,<4.1.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38]
bioconductor-ensembldb -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38]
r-biocmanager -> r-base[version='>=4.1,<4.2.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> python_abi[version='3.6|3.7',build='*_pypy37_pp73|*_pypy36_pp73']
r-ggplot2 -> r-base[version='>=4.0,<4.1.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi=2.7[build=*_cp27m]
macs2[version='>=2.2.7.1'] -> python_abi[version='3.6.*|3.7.*|3.8.*|3.9.*',build='*_cp38|*_cp36m|*_cp37m|*_cp39']
r-data.table -> r-base=3.4.1 -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> python_abi[version='3.6.*|3.7.*|3.9.*',build='*_cp39|*_cp36m|*_cp37m']
refgenie[version='>=0.9.3'] -> piper[version='>=0.12.1'] -> pandas -> python_abi[version='3.6.*|3.7.*|3.8.*|3.9.*',build='*_cp38|*_cp36m|*_cp37m|*_cp39']
pytest-runner -> pytest -> pathlib2 -> python_abi=2.7[build=*_cp27m]
r-devtools -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> python_abi[version='3.6.*|3.7.*|3.9.*',build='*_cp39|*_cp36m|*_cp37m']
macs2[version='>=2.2.7.1'] -> python[version='>=3.6,<3.7.0a0'] -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi[version='2.7.*|3.6|3.7',build='*_pypy37_pp73|*_cp27m|*_pypy36_pp73']
logmuse[version='>=0.2.5'] -> python -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi=2.7[build=*_cp27m]
python-levenshtein[version='>=0.12.0'] -> python_abi[version='3.6|3.6.*|3.7.*|3.8.*|3.9.*|3.7',build='*_pypy37_pp73|*_cp38|*_cp36m|*_cp37m|*_cp39|*_pypy36_pp73']
r-devtools -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38]
python-levenshtein[version='>=0.12.0'] -> cython -> python_abi=2.7[build=*_cp27m]
refgenie[version='>=0.9.3'] -> refgenconf[version='>=0.10.0'] -> jsonschema[version='>=3.0.1'] -> pyrsistent[version='>=0.14.0'] -> python_abi=2.7[build=*_cp27m]
fseq -> python=3.5 -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi[version='2.7.*|3.7.*|3.8.*|3.9.*|3.7',build='*_pypy37_pp73|*_cp39|*_cp27m|*_cp37m|*_cp38']
bowtie2[version='>=2.4.2'] -> python[version='>=3.8,<3.9.0a0'] -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi[version='2.7.*|3.6|3.7',build='*_pypy37_pp73|*_cp27m|*_pypy36_pp73']
bioconductor-experimenthub -> r-base=3.4.1 -> pango=1.40 -> glib[version='>=2.63.1,<3.0a0'] -> python= -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi=2.7[build=*_cp27m]
bioconductor-experimenthub -> r-base=3.4.1 -> pango=1.40 -> glib[version='>=2.63.1,<3.0a0'] -> python= -> python_abi[version='3.6|3.7',build='*_pypy37_pp73|*_pypy36_pp73']
homer[version='>=4.11'] -> python_abi=2.7[build=*_cp27m]
oyaml[version='>=0.9'] -> pyyaml -> python_abi[version='2.7.*|3.6|3.7',build='*_pypy37_pp73|*_cp27m|*_pypy36_pp73']
python[version='>=3.8'] -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi[version='2.7.*|3.6.*|3.7.*|3.6|3.7',build='*_cp37m|*_cp36m|*_cp27m|*_pypy36_pp73|*_pypy37_pp73']
logmuse[version='>=0.2.5'] -> python -> pip -> setuptools -> python_abi[version='3.6.*|3.7.*|3.8.*|3.9.*',build='*_cp38|*_cp36m|*_cp37m|*_cp39']
genometools-genometools[version='>=1.6.1'] -> python[version='>=3.7,<3.8.0a0'] -> python_abi[version='3.6|3.7',build='*_pypy37_pp73|*_pypy36_pp73']
genometools-genometools[version='>=1.6.1'] -> python_abi[version='2.7.*|3.6.*|3.7.*|3.8.*',build='*_cp38|*_cp37m|*_cp36m|*_cp27m']
bioconductor-bsgenome -> r-base=3.4.1 -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38]
piper[version='>=0.12.1'] -> pandas -> python_abi[version='2.7.*|3.6.*|3.7.*|3.8.*|3.9.*|3.6|3.7',build='*_cp39|*_cp38|*_cp37m|*_cp36m|*_cp27m|*_pypy36_pp73|*_pypy37_pp73']
r-data.table -> r-base=3.4.1 -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38]
bioconductor-genomicranges -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> python_abi[version='3.6|3.7',build='*_pypy37_pp73|*_pypy36_pp73']
bioconductor-bsgenome -> r-base=3.4.1 -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> python_abi[version='3.6.*|3.7.*|3.9.*',build='*_cp39|*_cp36m|*_cp37m']
r-devtools -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi=2.7[build=*_cp27m]
pandas[version='>=0.20.2'] -> numexpr[version='>=2.7.0'] -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi=2.7[build=*_cp27m]
trimmomatic[version='>=0.39'] -> python -> python_abi[version='3.6|3.7',build='*_pypy37_pp73|*_pypy36_pp73']
colorama[version='>=0.3.9'] -> python -> pip -> setuptools -> python_abi[version='3.6.*|3.7.*|3.8.*|3.9.*',build='*_cp38|*_cp36m|*_cp37m|*_cp39']
pysam[version='>=0.13'] -> python[version='>=3.8,<3.9.0a0'] -> python_abi[version='3.6|3.7',build='*_pypy37_pp73|*_pypy36_pp73']
fseq -> python=3.5 -> pip -> setuptools -> python_abi=3.6[build=*_cp36m]
colorama[version='>=0.3.9'] -> python -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi=2.7[build=*_cp27m]
bioconductor-genomicfeatures -> r-base[version='>=4.1,<4.2.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi=2.7[build=*_cp27m]
bioconductor-experimenthub -> r-base=3.4.1 -> pango=1.40 -> glib[version='>=2.63.1,<3.0a0'] -> python_abi=3.8[build=*_cp38]
r-biocmanager -> r-base[version='>=4.1,<4.2.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> python_abi[version='3.6.*|3.7.*|3.9.*',build='*_cp39|*_cp36m|*_cp37m']
picard[version='>=2.24.0'] -> r-base -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> python_abi[version='3.6.*|3.7.*|3.9.*',build='*_cp39|*_cp36m|*_cp37m']
cykhash[version='>=1.0.2'] -> python_abi[version='3.6.*|3.7.*|3.8.*|3.9.*',build='*_cp38|*_cp36m|*_cp37m|*_cp39']
ubiquerg[version='>=0.6.1'] -> python -> python_abi[version='3.6|3.7',build='*_pypy37_pp73|*_pypy36_pp73']
picard[version='>=2.24.0'] -> r-base -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> python_abi[version='3.6|3.7',build='*_pypy37_pp73|*_pypy36_pp73']
genometools-genometools[version='>=1.6.1'] -> python[version='>=3.7,<3.8.0a0'] -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi=3.9[build=*_cp39]
ubiquerg[version='>=0.6.1'] -> veracitools -> pytest -> pathlib2 -> python_abi=2.7[build=*_cp27m]
r-data.table -> r-base=3.4.1 -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> python_abi[version='3.6|3.7',build='*_pypy37_pp73|*_pypy36_pp73']
bioconductor-ensembldb -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> python_abi[version='3.6|3.7',build='*_pypy37_pp73|*_pypy36_pp73']
bowtie2[version='>=2.4.2'] -> python_abi[version='3.6.*|3.7.*|3.8.*|3.9.*',build='*_cp38|*_cp36m|*_cp37m|*_cp39']
jsonschema[version='>=3.0.1'] -> python_abi[version='2.7.*|3.6.*|3.7.*|3.8.*|3.6',build='*_cp38|*_cp37m|*_cp36m|*_cp27m|*_pypy36_pp73']
hmmratac[version='>=1.2.10'] -> python -> python_abi[version='3.6|3.7',build='*_pypy37_pp73|*_pypy36_pp73']
hmmratac[version='>=1.2.10'] -> python -> pip -> setuptools -> python_abi[version='3.6.*|3.7.*|3.8.*|3.9.*',build='*_cp38|*_cp36m|*_cp37m|*_cp39']
logmuse[version='>=0.2.5'] -> python -> python_abi[version='3.6|3.7',build='*_pypy37_pp73|*_pypy36_pp73']
colorama[version='>=0.3.9'] -> python -> python_abi[version='3.6|3.7',build='*_pypy37_pp73|*_pypy36_pp73']
oyaml[version='>=0.9'] -> python_abi[version='3.6.*|3.7.*|3.8.*|3.9.*',build='*_cp38|*_cp36m|*_cp37m|*_cp39']
pandas[version='>=0.20.2'] -> python_abi[version='3.6|3.6.*|3.7.*|3.8.*|3.9.*|3.7',build='*_pypy37_pp73|*_cp38|*_cp36m|*_cp37m|*_cp39|*_pypy36_pp73']
attmap[version='>=0.12.9'] -> python -> pip -> setuptools -> python_abi[version='3.6.*|3.7.*|3.8.*|3.9.*',build='*_cp38|*_cp36m|*_cp37m|*_cp39']
cykhash[version='>=1.0.2'] -> python[version='>=3.9,<3.10.0a0'] -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi[version='2.7.*|3.6|3.7',build='*_pypy37_pp73|*_cp27m|*_pypy36_pp73']
r-data.table -> r-base=3.4.1 -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi=2.7[build=*_cp27m]
hmmratac[version='>=1.2.10'] -> python -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi=2.7[build=*_cp27m]
attmap[version='>=0.12.9'] -> python -> python_abi[version='3.6|3.7',build='*_pypy37_pp73|*_pypy36_pp73']
r-gplots -> r-base[version='>=4.0,<4.1.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> python_abi[version='3.6|3.7',build='*_pypy37_pp73|*_pypy36_pp73']
pyyaml[version='>=3.13'] -> python_abi[version='2.7.*|3.6.*|3.7.*|3.8.*|3.9.*|3.6|3.7',build='*_cp39|*_cp38|*_cp37m|*_cp36m|*_cp27m|*_pypy36_pp73|*_pypy37_pp73']
r-ggplot2 -> r-base[version='>=4.0,<4.1.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> python_abi[version='3.6|3.7',build='*_pypy37_pp73|*_pypy36_pp73']
jinja2[version='>=2.11.2'] -> markupsafe[version='>=2.0'] -> python_abi[version='2.7.*|3.6.*|3.7.*|3.8.*|3.9.*|3.6|3.7',build='*_cp39|*_cp38|*_cp37m|*_cp36m|*_cp27m|*_pypy36_pp73|*_pypy37_pp73']
peppy[version='>=0.31.0'] -> pandas[version='>=0.24.2'] -> python_abi[version='2.7.*|3.6.*|3.7.*|3.8.*|3.9.*|3.6|3.7',build='*_cp39|*_cp38|*_cp37m|*_cp36m|*_cp27m|*_pypy36_pp73|*_pypy37_pp73']
typing_extensions[version='>=3.7.4.1'] -> python_abi[version='2.7.*|3.6.*|3.7.*|3.8.*|3.6',build='*_cp38|*_cp37m|*_cp36m|*_cp27m|*_pypy36_pp73']
bioconductor-bsgenome -> r-base=3.4.1 -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi=2.7[build=*_cp27m]
refgenconf[version='>=0.7.0'] -> future -> python_abi[version='2.7.*|3.6.*|3.7.*|3.8.*|3.9.*|3.6|3.7',build='*_cp39|*_cp38|*_cp37m|*_cp36m|*_cp27m|*_pypy36_pp73|*_pypy37_pp73']
r-gplots -> r-base[version='>=4.0,<4.1.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi=2.7[build=*_cp27m]
bioconductor-bsgenome -> r-base=3.4.1 -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> python_abi[version='3.6|3.7',build='*_pypy37_pp73|*_pypy36_pp73']
picard[version='>=2.24.0'] -> r-base -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi=2.7[build=*_cp27m]
attmap[version='>=0.12.9'] -> python -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi=2.7[build=*_cp27m]
r-base[version='>=4.0.3'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi=2.7[build=*_cp27m]
jsonschema[version='>=3.0.1'] -> pyrsistent[version='>=0.14.0'] -> python_abi[version='3.7|3.9.*',build='*_pypy37_pp73|*_cp39']
r-ggplot2 -> r-base[version='>=4.0,<4.1.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> python_abi[version='3.6.*|3.7.*|3.9.*',build='*_cp39|*_cp36m|*_cp37m']
r-base[version='>=4.0.3'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> python_abi[version='3.6.*|3.7.*|3.9.*',build='*_cp39|*_cp36m|*_cp37m']
r-devtools -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> python_abi[version='3.6|3.7',build='*_pypy37_pp73|*_pypy36_pp73']
setuptools -> python_abi[version='3.6|3.6.*|3.7.*|3.8.*|3.9.*|3.7',build='*_pypy37_pp73|*_cp38|*_cp36m|*_cp37m|*_cp39|*_pypy36_pp73']
refgenie[version='>=0.9.3'] -> python[version='>=3.6'] -> python_abi[version='3.6|3.7',build='*_pypy37_pp73|*_pypy36_pp73']
ubiquerg[version='>=0.6.1'] -> veracitools -> pytest -> python_abi[version='3.6.*|3.7.*|3.8.*|3.9.*',build='*_cp38|*_cp36m|*_cp37m|*_cp39']
trimmomatic[version='>=0.39'] -> python -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi=2.7[build=*_cp27m]
fseq -> python=3.5 -> python_abi==3.6[build=*_pypy36_pp73]
r-biocmanager -> r-base[version='>=4.1,<4.2.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38]
bioconductor-genomicfeatures -> r-base[version='>=4.1,<4.2.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> python_abi[version='3.6|3.7',build='*_pypy37_pp73|*_pypy36_pp73']
bioconductor-genomicranges -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38]
yacman[version='>=0.6.7'] -> jsonschema[version='>=3.2.0'] -> python_abi[version='2.7.*|3.6.*|3.7.*|3.8.*|3.9.*|3.6|3.7',build='*_cp39|*_cp38|*_cp37m|*_cp36m|*_cp27m|*_pypy36_pp73|*_pypy37_pp73']
codecov[version='>=2.0'] -> coverage -> python_abi[version='2.7.*|3.6.*|3.7.*|3.8.*|3.9.*|3.6|3.7',build='*_cp39|*_cp38|*_cp37m|*_cp36m|*_cp27m|*_pypy36_pp73|*_pypy37_pp73']
bioconductor-genomicfeatures -> r-base[version='>=4.1,<4.2.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> python_abi[version='3.6.*|3.7.*|3.9.*',build='*_cp39|*_cp36m|*_cp37m']
psutil[version='>=5.6.3'] -> python_abi[version='2.7.*|3.6.*|3.7.*|3.8.*|3.9.*|3.6|3.7',build='*_cp39|*_cp38|*_cp37m|*_cp36m|*_cp27m|*_pypy36_pp73|*_pypy37_pp73']
bioconductor-genomicfeatures -> r-base[version='>=4.1,<4.2.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38]
setuptools -> certifi[version='>=2016.9.26'] -> python_abi=2.7[build=*_cp27m]
bioconductor-experimenthub -> r-base=3.4.1 -> pango=1.40 -> glib[version='>=2.63.1,<3.0a0'] -> python= -> pip -> setuptools -> python_abi[version='3.6.*|3.7.*|3.9.*',build='*_cp39|*_cp36m|*_cp37m']
r-biocmanager -> r-base[version='>=4.1,<4.2.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi=2.7[build=*_cp27m]
r-base[version='>=4.0.3'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38]
picard[version='>=2.24.0'] -> r-base -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38]
bioconductor-genomicranges -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> python_abi[version='3.6.*|3.7.*|3.9.*',build='*_cp39|*_cp36m|*_cp37m']
bioconductor-ensembldb -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> certifi[version='>=2016.9.26'] -> python_abi=2.7[build=*_cp27m]
typing_extensions[version='>=3.7.4.1'] -> python[version='>=3.5'] -> python_abi[version='3.7|3.9.*',build='*_pypy37_pp73|*_cp39']
trimmomatic[version='>=0.39'] -> python -> pip -> setuptools -> python_abi[version='3.6.*|3.7.*|3.8.*|3.9.*',build='*_cp38|*_cp36m|*_cp37m|*_cp39']
bioconductor-ensembldb -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> python_abi[version='3.6.*|3.7.*|3.9.*',build='*_cp39|*_cp36m|*_cp37m']
r-gplots -> r-base[version='>=4.0,<4.1.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools -> python_abi[version='3.6.*|3.7.*|3.9.*',build='*_cp39|*_cp36m|*_cp37m']
Package setuptools conflicts for:
pytest-runner -> setuptools
refgenconf[version='>=0.7.0'] -> ubiquerg[version='>=0.5.0'] -> veracitools -> pytest -> setuptools[version='>=40.0']
piper[version='>=0.12.1'] -> ubiquerg[version='>=0.4.5'] -> veracitools -> pytest -> setuptools[version='>=40.0']
cython[version='>=0.29'] -> setuptools
pandas[version='>=0.20.2'] -> numexpr[version='>=2.7.0'] -> setuptools
hmmratac[version='>=1.2.10'] -> python -> pip -> setuptools
yacman[version='>=0.6.7'] -> ubiquerg[version='>=0.6.1'] -> veracitools -> pytest -> setuptools[version='>=40.0']
refgenie[version='>=0.9.3'] -> piper[version='>=0.12.1'] -> ubiquerg[version='>=0.4.5'] -> veracitools -> pytest -> setuptools[version='>=40.0']
peppy[version='>=0.31.0'] -> ubiquerg[version='>=0.5.2'] -> veracitools -> pytest -> setuptools[version='>=40.0']
cykhash[version='>=1.0.2'] -> python[version='>=3.9,<3.10.0a0'] -> pip -> setuptools
ubiquerg[version='>=0.6.1'] -> veracitools -> pytest -> setuptools[version='>=40.0']
bioconductor-genomicfeatures -> r-base[version='>=4.1,<4.2.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools
macs2[version='>=2.2.7.1'] -> python[version='>=3.6,<3.7.0a0'] -> pip -> setuptools
bioconductor-genomicranges -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools
jinja2[version='>=2.11.2'] -> setuptools
jsonschema[version='>=3.0.1'] -> setuptools
yacman[version='>=0.6.7'] -> jsonschema[version='>=3.2.0'] -> setuptools
r-biocmanager -> r-base[version='>=4.1,<4.2.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools
pysam[version='>=0.13'] -> python[version='>=3.8,<3.9.0a0'] -> pip -> setuptools
attmap[version='>=0.12.9'] -> ubiquerg[version='>=0.2.1'] -> veracitools -> pytest -> setuptools[version='>=40.0']
picard[version='>=2.24.0'] -> r-base -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools
codecov[version='>=2.0'] -> setuptools
refgenconf[version='>=0.7.0'] -> jsonschema[version='>=3.0.1'] -> setuptools
trimmomatic[version='>=0.39'] -> python -> pip -> setuptools
psutil[version='>=5.6.3'] -> python[version='>=3.6,<3.7.0a0'] -> pip -> setuptools
piper[version='>=0.12.1'] -> pandas -> numexpr[version='>=2.7.0'] -> setuptools
r-base[version='>=4.0.3'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools
python-levenshtein[version='>=0.12.0'] -> cython -> setuptools
bioconductor-experimenthub -> r-base=3.4.1 -> pango=1.40 -> glib[version='>=2.63.1,<3.0a0'] -> python= -> pip -> setuptools
typing_extensions[version='>=3.7.4.1'] -> python[version='>=3.5'] -> pip -> setuptools
r-devtools -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools
attmap[version='>=0.12.9'] -> python -> pip -> setuptools
oyaml[version='>=0.9'] -> python[version='>=3.6,<3.7.0a0'] -> pip -> setuptools
peppy[version='>=0.31.0'] -> pandas[version='>=0.24.2'] -> numexpr[version='>=2.7.0'] -> setuptools
pytest-runner -> pytest -> setuptools[version='>=40.0']
setuptools
colorama[version='>=0.3.9'] -> python -> pip -> setuptools
r-gplots -> r-base[version='>=4.0,<4.1.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools
pyyaml[version='>=3.13'] -> cython -> setuptools
bowtie2[version='>=2.4.2'] -> python[version='>=3.8,<3.9.0a0'] -> pip -> setuptools
bioconductor-bsgenome -> r-base=3.4.1 -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools
bioconductor-ensembldb -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools
genometools-genometools[version='>=1.6.1'] -> python[version='>=3.7,<3.8.0a0'] -> pip -> setuptools
r-ggplot2 -> r-base[version='>=4.0,<4.1.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools
refgenie[version='>=0.9.3'] -> python[version='>=3.6'] -> pip -> setuptools
r-data.table -> r-base=3.4.1 -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python= -> pip -> setuptools
fseq -> python=3.5 -> pip -> setuptools
logmuse[version='>=0.2.5'] -> python -> pip -> setuptools
homer[version='>=4.11'] -> python_abi=2.7[build=*_cp27m] -> python=2.7 -> pip -> setuptools
python[version='>=3.8'] -> pip -> setuptools
Package python conflicts for:
yacman[version='>=0.6.7'] -> jsonschema[version='>=3.2.0'] -> importlib_metadata -> zipp[version='>=0.5'] -> more-itertools -> python[version='>=3.4|>=3.8.0a,<3.9.0a0']
attmap[version='>=0.12.9'] -> ubiquerg[version='>=0.2.1'] -> veracitools -> pytest -> python[version='2.7.*|3.4.*|3.5.*|3.6.*|>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
jsonschema[version='>=3.0.1'] -> python_abi=3.6[build=*_cp36m] -> python[version='2.7.*|3.5.*|3.6.*|3.7.*|3.8.*|3.9.*|>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*|>=3']
r-ggplot2 -> r-base[version='>=4.0,<4.1.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python[version='*|>=2.7|>=3.8,<3.9.0a0']
cython[version='>=0.29'] -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
refgenie[version='>=0.9.3'] -> refgenconf[version='>=0.10.0'] -> requests -> urllib3[version='>=1.21.1,<1.26,!=1.25.0,!=1.25.1'] -> ipaddress -> python[version='<=3.3']
jinja2[version='>=2.11.2'] -> python[version='>=3.6']
pysam[version='>=0.13'] -> python[version='2.7.*|3.5.*|3.6.*|>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
refgenie[version='>=0.9.3'] -> piper[version='>=0.12.1'] -> pandas -> numexpr[version='>=2.7.0'] -> python[version='2.7.*|3.7.*|3.8.*|3.9.*|<4.0|>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*|>=2.7,<2.8.0a0|>=3.5|>=3.6,<4.0']
hmmratac[version='>=1.2.10'] -> python
pytest-runner -> pytest -> attrs[version='>=19.2.0'] -> hypothesis -> black[version='>=19.10b0'] -> dataclasses[version='>=0.6'] -> python[version='>=3.6,<3.7|>=3.7']
refgenie[version='>=0.9.3'] -> python[version='>=3|>=3.6']
peppy[version='>=0.31.0'] -> ubiquerg[version='>=0.5.2'] -> veracitools -> pytest -> attrs[version='>=19.2.0'] -> hypothesis -> black[version='>=19.10b0'] -> dataclasses[version='>=0.6'] -> python[version='>=3.6,<3.7|>=3.7']
codecov[version='>=2.0'] -> python[version='2.7.*|3.5.*|3.6.*']
refgenie[version='>=0.9.3'] -> refgenconf[version='>=0.10.0'] -> jsonschema[version='>=3.0.1'] -> attrs[version='>=17.4.0'] -> hypothesis -> black[version='>=19.10b0'] -> dataclasses[version='>=0.6'] -> python[version='>=3.6,<3.7|>=3.7']
jinja2[version='>=2.11.2'] -> markupsafe[version='>=2.0'] -> python[version='2.7.*|3.4.*|3.5.*|3.6.*|>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
r-data.table -> r-base=3.4.1 -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python[version='*|>=2.7|>=3.8,<3.9.0a0']
python[version='>=3.8']
python-levenshtein[version='>=0.12.0'] -> python_abi=3.9[build=*_cp39] -> python[version='3.10.*|3.7.*|3.8.*|3.9.*|>=3.5,<3.6.0a0|>=3.6|>=3.8.0a,<3.9.0a0']
pandas[version='>=0.20.2'] -> python_abi=3.9[build=*_cp39] -> python[version='3.7.*|3.8.*|3.9.*|>=3|>=3.6']
r-ggplot2 -> r-base[version='>=4.0,<4.1.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38] -> python[version='2.7.*|3.10.*|3.5.*|3.6.*|3.7.*|3.8.*|3.9.*']
r-devtools -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38] -> python[version='2.7.*|3.10.*|3.5.*|3.6.*|3.7.*|3.8.*|3.9.*']
pysam[version='>=0.13'] -> python_abi=3.8[build=*_cp38] -> python[version='3.7.*|3.8.*|3.9.*']
python-levenshtein[version='>=0.12.0'] -> cython -> setuptools -> certifi[version='>=2016.9.26'] -> python
attmap[version='>=0.12.9'] -> ubiquerg[version='>=0.2.1'] -> veracitools -> pytest -> attrs[version='>=19.2.0'] -> hypothesis -> black[version='>=19.10b0'] -> dataclasses[version='>=0.6'] -> python[version='>=3.6,<3.7|>=3.7']
pytest-runner -> python[version='2.7.*|3.4.*|3.5.*|3.6.*|>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.6|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0']
oyaml[version='>=0.9'] -> python_abi=3.6[build=*_cp36m] -> python[version='2.7.*|3.4.*|3.5.*|3.6.*|3.7.*|3.8.*|3.9.*|>=3.5,<3.6.0a0']
cython[version='>=0.29'] -> setuptools -> certifi[version='>=2016.9.26'] -> python[version='>=3.5,<3.6.0a0']
jsonschema[version='>=3.0.1'] -> importlib-metadata -> typing_extensions[version='>=3.6.4'] -> python[version='>=3.5|>=3.5,<3.6.0a0']
homer[version='>=4.11'] -> python_abi=2.7[build=*_cp27m] -> python=2.7
bowtie2[version='>=2.4.2'] -> python[version='>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
bioconductor-genomicranges -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python[version='*|>=2.7|>=3.8,<3.9.0a0']
bioconductor-genomicfeatures -> r-base[version='>=4.1,<4.2.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python[version='*|>=2.7|>=3.8,<3.9.0a0']
attmap[version='>=0.12.9'] -> ubiquerg[version='>=0.2.1'] -> veracitools -> pytest -> python_abi=3.6[build=*_cp36m] -> python[version='3.7.*|3.8.*|3.9.*|>=2.7|>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*|>=3|>=3.4|>=3.5|>=3.8.0a,<3.9.0a0']
bowtie2[version='>=2.4.2'] -> python_abi=3.8[build=*_cp38] -> python[version='3.6.*|3.7.*|3.8.*|3.9.*']
genometools-genometools[version='>=1.6.1'] -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0']
refgenie[version='>=0.9.3'] -> refgenconf[version='>=0.10.0'] -> requests -> urllib3[version='>=1.21.1,<1.26,!=1.25.0,!=1.25.1'] -> cryptography[version='>=1.3.4'] -> cffi[version='!=1.11.3,>=1.8'] -> python[version='3.6.12|3.6.9|3.6.9|3.6.9|3.7.10|3.7.10|3.7.9|>=3.4|>=3.8.0a,<3.9.0a0',build='1_73_pypy|5_73_pypy|4_73_pypy|0_73_pypy|2_73_pypy|3_73_pypy|0_73_pypy|5_73_pypy']
yacman[version='>=0.6.7'] -> oyaml -> python[version='>=2.7|>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
cykhash[version='>=1.0.2'] -> python_abi=3.9[build=*_cp39] -> python[version='3.6.*|3.7.*|3.8.*|3.9.*']
ubiquerg[version='>=0.6.1'] -> python
refgenconf[version='>=0.7.0'] -> future -> python_abi=3.8[build=*_cp38] -> python[version='3.7.*|3.8.*|3.9.*|<4.0|>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*|>=3|>=3.5|>=3.6,<4.0']
peppy[version='>=0.31.0'] -> pandas[version='>=0.24.2'] -> python_abi=3.9[build=*_cp39] -> python[version='2.7.*|3.5.*|3.6.*|3.7.*|3.8.*|3.9.*|>=3|>=3.5,<3.6.0a0']
pytest-runner -> pytest -> python[version='>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
piper[version='>=0.12.1'] -> yacman -> jsonschema[version='>=3.2.0'] -> attrs[version='>=17.4.0'] -> hypothesis -> black[version='>=19.10b0'] -> dataclasses[version='>=0.6'] -> python[version='>=3.6,<3.7|>=3.7']
picard[version='>=2.24.0'] -> r-base -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38] -> python[version='2.7.*|3.10.*|3.5.*|3.6.*|3.7.*|3.8.*|3.9.*']
yacman[version='>=0.6.7'] -> jsonschema[version='>=3.2.0'] -> attrs[version='>=17.4.0'] -> hypothesis -> black[version='>=19.10b0'] -> dataclasses[version='>=0.6'] -> python[version='>=3.6,<3.7|>=3.7']
r-biocmanager -> r-base[version='>=4.1,<4.2.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38] -> python[version='2.7.*|3.10.*|3.5.*|3.6.*|3.7.*|3.8.*|3.9.*']
macs2[version='>=2.2.7.1'] -> python_abi=3.6[build=*_cp36m] -> python[version='3.6.*|3.7.*|3.8.*|3.9.*']
logmuse[version='>=0.2.5'] -> python
codecov[version='>=2.0'] -> coverage -> python[version='3.4.*|>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.6|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
attmap[version='>=0.12.9'] -> python[version='>=3.6']
peppy[version='>=0.31.0'] -> python[version='>=3.6']
yacman[version='>=0.6.7'] -> python[version='>=3.6']
bioconductor-experimenthub -> r-base=3.4.1 -> pango=1.40 -> glib[version='>=2.63.1,<3.0a0'] -> python[version='*|>=2.7|>=3.8,<3.9.0a0']
bioconductor-experimenthub -> r-base=3.4.1 -> pango=1.40 -> glib[version='>=2.63.1,<3.0a0'] -> python_abi=3.8[build=*_cp38] -> python[version='2.7.*|3.10.*|3.5.*|3.6.*|3.7.*|3.8.*|3.9.*']
jinja2[version='>=2.11.2'] -> markupsafe[version='>=2.0'] -> python_abi=3.7[build=*_cp37m] -> python[version='3.7.*|3.8.*|3.9.*']
bioconductor-genomicranges -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38] -> python[version='2.7.*|3.10.*|3.5.*|3.6.*|3.7.*|3.8.*|3.9.*']
r-data.table -> r-base=3.4.1 -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38] -> python[version='2.7.*|3.10.*|3.5.*|3.6.*|3.7.*|3.8.*|3.9.*']
jsonschema[version='>=3.0.1'] -> importlib_metadata -> zipp[version='>=0.5'] -> more-itertools -> python[version='>=3.4|>=3.8.0a,<3.9.0a0']
cython[version='>=0.29'] -> python_abi=3.8[build=*_cp38] -> python[version='2.7.*|3.5.*|3.6.*|3.7.*|3.8.*|3.9.*']
genometools-genometools[version='>=1.6.1'] -> python_abi=3.7[build=*_cp37m] -> python[version='2.7.*|3.5.*|3.6.*|3.7.*|3.8.*|3.9.*']
bioconductor-ensembldb -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python[version='*|>=2.7|>=3.8,<3.9.0a0']
pytest-runner -> pytest -> python_abi=3.6[build=*_cp36m] -> python[version='3.7.*|3.8.*|3.9.*|>=2.7|>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*|>=3|>=3.4|>=3.5|>=3.8.0a,<3.9.0a0']
refgenconf[version='>=0.7.0'] -> requests -> urllib3[version='>=1.21.1,<1.24'] -> cryptography[version='>=1.3.4'] -> cffi[version='!=1.11.3,>=1.8'] -> python[version='3.6.12|3.6.9|3.6.9|3.6.9|3.7.10|3.7.10|3.7.9|>=3.4|>=3.8.0a,<3.9.0a0',build='1_73_pypy|5_73_pypy|4_73_pypy|0_73_pypy|2_73_pypy|3_73_pypy|0_73_pypy|5_73_pypy']
yacman[version='>=0.6.7'] -> jsonschema[version='>=3.2.0'] -> attrs[version='>=17.4.0'] -> hypothesis -> python[version='>=3.5']
fseq -> python[version='2.7.*|3.5.*|3.6.*']
oyaml[version='>=0.9'] -> python[version='>=2.7|>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
yacman[version='>=0.6.7'] -> jsonschema[version='>=3.2.0'] -> python_abi=3.6[build=*_cp36m] -> python[version='2.7.*|3.5.*|3.6.*|3.7.*|3.8.*|3.9.*|>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*|>=3']
pyyaml[version='>=3.13'] -> python_abi=3.9[build=*_cp39] -> python[version='2.7.*|3.5.*|3.6.*|3.7.*|3.8.*|3.9.*']
r-base[version='>=4.0.3'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python[version='*|>=2.7|>=3.8,<3.9.0a0']
r-base[version='>=4.0.3'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38] -> python[version='2.7.*|3.10.*|3.5.*|3.6.*|3.7.*|3.8.*|3.9.*']
pysam[version='>=0.13'] -> bcftools=1.9 -> matplotlib -> cycler[version='>=0.10'] -> python[version='>=3|>=3.6']
piper[version='>=0.12.1'] -> python[version='>=3']
codecov[version='>=2.0'] -> coverage -> python_abi=3.6[build=*_cp36m] -> python[version='3.7.*|3.8.*|3.9.*|<4.0|>=3.5|>=3.6,<4.0']
r-biocmanager -> r-base[version='>=4.1,<4.2.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python[version='*|>=2.7|>=3.8,<3.9.0a0']
macs2[version='>=2.2.7.1'] -> numpy[version='>=1.17'] -> mkl-service[version='>=2.3.0,<3.0a0'] -> six -> python[version='*|2.7.*|3.5.*|>=2.7|>=2.7,<2.8.0a0|>=3.5,<3.6.0a0']
trimmomatic[version='>=0.39'] -> python
refgenconf[version='>=0.7.0'] -> jsonschema[version='>=3.0.1'] -> attrs[version='>=17.4.0'] -> hypothesis -> black[version='>=19.10b0'] -> dataclasses[version='>=0.6'] -> python[version='>=3.6,<3.7|>=3.7']
cykhash[version='>=1.0.2'] -> python[version='>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
bioconductor-bsgenome -> r-base=3.4.1 -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38] -> python[version='2.7.*|3.10.*|3.5.*|3.6.*|3.7.*|3.8.*|3.9.*']
typing_extensions[version='>=3.7.4.1'] -> python[version='>=2.7,<2.8.0a0|>=3.5|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0']
bioconductor-genomicfeatures -> r-base[version='>=4.1,<4.2.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38] -> python[version='2.7.*|3.10.*|3.5.*|3.6.*|3.7.*|3.8.*|3.9.*']
bioconductor-ensembldb -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38] -> python[version='2.7.*|3.10.*|3.5.*|3.6.*|3.7.*|3.8.*|3.9.*']
psutil[version='>=5.6.3'] -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
codecov[version='>=2.0'] -> requests[version='>=2.7.9'] -> urllib3[version='>=1.21.1,<1.24'] -> cryptography[version='>=1.3.4'] -> cffi[version='!=1.11.3,>=1.8'] -> python[version='3.6.12|3.6.9|3.6.9|3.6.9|3.7.10|3.7.10|3.7.9',build='1_73_pypy|5_73_pypy|4_73_pypy|0_73_pypy|2_73_pypy|3_73_pypy|0_73_pypy|5_73_pypy']
r-gplots -> r-base[version='>=4.0,<4.1.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python[version='*|>=2.7|>=3.8,<3.9.0a0']
macs2[version='>=2.2.7.1'] -> python[version='>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
ubiquerg[version='>=0.6.1'] -> veracitools -> pytest -> python[version='2.7.*|3.4.*|3.5.*|3.6.*|>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
r-gplots -> r-base[version='>=4.0,<4.1.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python_abi=3.8[build=*_cp38] -> python[version='2.7.*|3.10.*|3.5.*|3.6.*|3.7.*|3.8.*|3.9.*']
refgenconf[version='>=0.7.0'] -> requests -> urllib3[version='>=1.21.1,<1.24'] -> ipaddress -> python[version='<=3.3']
piper[version='>=0.12.1'] -> ubiquerg[version='>=0.4.5'] -> veracitools -> pytest -> more-itertools[version='>=4.0.0'] -> python[version='>=3.4|>=3.5|>=3.8.0a,<3.9.0a0']
peppy[version='>=0.31.0'] -> ubiquerg[version='>=0.5.2'] -> veracitools -> pytest -> packaging -> python[version='>=2.7|>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*|>=3.4|>=3.5|>=3.8.0a,<3.9.0a0']
setuptools -> python_abi=3.6[build=*_cp36m] -> python[version='3.10.*|3.7.*|3.8.*|3.9.*']
colorama[version='>=0.3.9'] -> python[version='2.7.*|3.5.*|3.6.*|>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0']
refgenconf[version='>=0.7.0'] -> future -> python[version='2.7.*|3.5.*|3.6.*|>=2.7|>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
ubiquerg[version='>=0.6.1'] -> veracitools -> pytest -> attrs[version='>=19.2.0'] -> hypothesis -> black[version='>=19.10b0'] -> dataclasses[version='>=0.6'] -> python[version='>=3.6,<3.7|>=3.7']
r-devtools -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python[version='*|>=2.7|>=3.8,<3.9.0a0']
picard[version='>=2.24.0'] -> r-base -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python[version='*|>=2.7|>=3.8,<3.9.0a0']
bioconductor-bsgenome -> r-base=3.4.1 -> cairo[version='>=1.14.12,<2.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python[version='*|>=2.7|>=3.8,<3.9.0a0']
jsonschema[version='>=3.0.1'] -> python[version='>=2.7,<2.8.0a0|>=3.6|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
pyyaml[version='>=3.13'] -> cython -> setuptools -> certifi[version='>=2016.9.26'] -> python
refgenconf[version='>=0.7.0'] -> python[version='>=3.6']
pyyaml[version='>=3.13'] -> python[version='>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
psutil[version='>=5.6.3'] -> python_abi==3.7[build=*_pypy37_pp73] -> python[version='2.7.*|3.5.*|3.6.*|3.7.*|3.8.*|3.9.*']
codecov[version='>=2.0'] -> requests[version='>=2.7.9'] -> urllib3[version='>=1.21.1,<1.24'] -> ipaddress -> python[version='<=3.3|>=2.7']
python-levenshtein[version='>=0.12.0'] -> python[version='2.7.*|3.4.*|3.5.*|3.6.*|>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
piper[version='>=0.12.1'] -> yacman -> jsonschema[version='>=3.2.0'] -> attrs[version='>=17.4.0'] -> python[version='>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*']
refgenie[version='>=0.9.3'] -> logmuse[version='>=0.2.6'] -> python
python-levenshtein[version='>=0.12.0'] -> cython -> setuptools -> python[version='>=3.10,<3.11.0a0']
typing_extensions[version='>=3.7.4.1'] -> python_abi=3.6[build=*_cp36m] -> python[version='2.7.*|3.10.*|3.5.*|3.6.*|3.7.*|3.8.*|3.9.*|>=3|>=3.9,<3.10.0a0']
oyaml[version='>=0.9'] -> pyyaml -> cython -> setuptools -> certifi[version='>=2016.9.26'] -> python
piper[version='>=0.12.1'] -> pandas -> python_abi=3.9[build=*_cp39] -> python[version='3.7.*|3.8.*|3.9.*|>=2.7']
ubiquerg[version='>=0.6.1'] -> veracitools -> pytest -> python_abi=3.6[build=*_cp36m] -> python[version='3.7.*|3.8.*|3.9.*|>=2.7|>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*|>=3|>=3.4|>=3.5|>=3.6|>=3.8.0a,<3.9.0a0']
setuptools -> python[version='2.7.*|3.4.*|3.5.*|3.6.*|>=2.7,<2.8.0a0|>=3.10,<3.11.0a0|>=3.5,<3.6.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
pysam[version='>=0.13'] -> bcftools=1.9 -> texlive-core -> cairo[version='>=1.16.0,<1.17.0a0'] -> glib[version='>=2.58.3,<3.0a0'] -> python[version='*|>=2.7']
Package libuuid conflicts for:
bioconductor-genomicranges -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> fontconfig[version='>=2.13.1,<3.0a0'] -> libuuid[version='>=1.0.3,<2.0a0']
ucsc-bedtobigbed[version='>=377'] -> libuuid[version='>=2.32.1,<3.0a0']
ucsc-bedgraphtobigwig[version='>=377'] -> libuuid[version='>=2.32.1,<3.0a0']
r-devtools -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> fontconfig[version='>=2.13.1,<3.0a0'] -> libuuid[version='>=1.0.3,<2.0a0']
r-gplots -> r-base[version='>=4.0,<4.1.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> fontconfig[version='>=2.13.1,<3.0a0'] -> libuuid[version='>=1.0.3,<2.0a0']
bioconductor-genomicfeatures -> r-base[version='>=4.1,<4.2.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> fontconfig[version='>=2.13.1,<3.0a0'] -> libuuid[version='>=1.0.3,<2.0a0']
pysam[version='>=0.13'] -> bcftools=1.9 -> texlive-core -> fontconfig[version='>=2.13.1,<3.0a0'] -> libuuid[version='>=1.0.3,<2.0a0']
fastqc[version='>=0.11.9'] -> fontconfig -> libuuid[version='>=1.0.3,<2.0a0']
genometools-genometools[version='>=1.6.1'] -> xorg-libsm -> libuuid=1.0
r-biocmanager -> r-base[version='>=4.1,<4.2.0a0'] -> cairo[version='>=1.16.0,<1.17.0a0'] -> fontconfig[version='>=2.13.1,<3.0a0'] -> libuuid[version='>=1.0.3,<2.0a0']
bioconductor-bsgenome -> r-base=3.4.1 -> cairo[version='>=1.14.12,<2.0a0'] -> fontconfig[version='>=2.13.1,<3.0a0'] -> libuuid[version='>=1.0.3,<2.0a0']
bioconductor-experimenthub -> r-base=3.4.1 -> pango=1.40 -> fontconfig=2.12 -> libuuid[version='>=1.0.3,<2.0a0']
bioconductor-ensembldb -> r-base[version='>=3.6,<3.7.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> fontconfig[version='>=2.13.1,<3.0a0'] -> libuuid[version='>=1.0.3,<2.0a0']
macs2[version='>=2.2.7.1'] -> r-base -> cairo[version='>=1.14.12,<2.0a0'] -> fontconfig[version='>=2.13.1,<3.0a0'] -> libuuid[version='>=1.0.3,<2.0a0']
r-ggplot2 -> r-base[version='>=4.0,<4.1.0a0'] -> cairo[version='>=1.14.12,<2.0a0'] -> fontconfig[version='>=2.13.1,<3.0a0'] -> libuuid[version='>=1.0.3,<2.0a0']
ucsc-wigtobigwig[version='>=377'] -> libuuid[version='>=2.32.1,<3.0a0']
ucsc-bigwigcat[version='>=377'] -> libuuid[version='>=2.32.1,<3.0a0']
r-data.table -> r-base=3.4.1 -> cairo[version='>=1.16.0,<1.17.0a0'] -> fontconfig[version='>=2.13.1,<3.0a0'] -> libuuid[version='>=1.0.3,<2.0a0']
picard[version='>=2.24.0'] -> r-base -> cairo[version='>=1.14.12,<2.0a0'] -> fontconfig[version='>=2.13.1,<3.0a0'] -> libuuid[version='>=1.0.3,<2.0a0']
ucsc-bigwigmerge[version='>=377'] -> libuuid[version='>=2.32.1,<3.0a0']
Package gsl conflicts for:
r-gplots -> r-base[version='>=4.0,<4.1.0a0'] -> gsl[version='>=2.2.1,<2.3.0a0|>=2.4,<2.5.0a0|>=2.5,<2.6.0a0|>=2.6,<2.7.0a0|>=2.7,<2.8.0a0']
r-devtools -> r-base[version='>=3.6,<3.7.0a0'] -> gsl[version='>=2.2.1,<2.3.0a0|>=2.4,<2.5.0a0|>=2.5,<2.6.0a0|>=2.6,<2.7.0a0|>=2.7,<2.8.0a0']
r-base[version='>=4.0.3'] -> gsl[version='>=2.6,<2.7.0a0|>=2.7,<2.8.0a0']
bioconductor-bsgenome -> r-base=3.4.1 -> gsl[version='>=2.2.1,<2.3.0a0|>=2.4,<2.5.0a0|>=2.5,<2.6.0a0|>=2.6,<2.7.0a0|>=2.7,<2.8.0a0']
picard[version='>=2.24.0'] -> r-base -> gsl[version='>=2.2.1,<2.3.0a0|>=2.4,<2.5.0a0|>=2.5,<2.6.0a0|>=2.6,<2.7.0a0|>=2.7,<2.8.0a0']
macs2[version='>=2.2.7.1'] -> r-base -> gsl[version='>=2.2.1,<2.3.0a0|>=2.4,<2.5.0a0|>=2.5,<2.6.0a0|>=2.6,<2.7.0a0|>=2.7,<2.8.0a0']
bioconductor-genomicfeatures -> r-base[version='>=4.1,<4.2.0a0'] -> gsl[version='>=2.2.1,<2.3.0a0|>=2.4,<2.5.0a0|>=2.5,<2.6.0a0|>=2.6,<2.7.0a0|>=2.7,<2.8.0a0']
r-biocmanager -> r-base[version='>=4.1,<4.2.0a0'] -> gsl[version='>=2.2.1,<2.3.0a0|>=2.4,<2.5.0a0|>=2.5,<2.6.0a0|>=2.6,<2.7.0a0|>=2.7,<2.8.0a0']
pysam[version='>=0.13'] -> bcftools=1.9 -> gsl[version='>=2.5,<2.6.0a0|>=2.6,<2.7.0a0']
bioconductor-experimenthub -> r-base=3.4.1 -> gsl[version='>=2.2.1,<2.3.0a0|>=2.4,<2.5.0a0|>=2.5,<2.6.0a0|>=2.6,<2.7.0a0|>=2.7,<2.8.0a0']
preseq=2.0.3 -> gsl[version='1.16.*|2.2.*']
bioconductor-ensembldb -> r-base[version='>=3.6,<3.7.0a0'] -> gsl[version='>=2.2.1,<2.3.0a0|>=2.4,<2.5.0a0|>=2.5,<2.6.0a0|>=2.6,<2.7.0a0|>=2.7,<2.8.0a0']
r-ggplot2 -> r-base[version='>=4.0,<4.1.0a0'] -> gsl[version='>=2.2.1,<2.3.0a0|>=2.4,<2.5.0a0|>=2.5,<2.6.0a0|>=2.6,<2.7.0a0|>=2.7,<2.8.0a0']
r-data.table -> r-base=3.4.1 -> gsl[version='>=2.2.1,<2.3.0a0|>=2.4,<2.5.0a0|>=2.5,<2.6.0a0|>=2.6,<2.7.0a0|>=2.7,<2.8.0a0']
bioconductor-genomicranges -> r-base[version='>=3.6,<3.7.0a0'] -> gsl[version='>=2.2.1,<2.3.0a0|>=2.4,<2.5.0a0|>=2.5,<2.6.0a0|>=2.6,<2.7.0a0|>=2.7,<2.8.0a0']
Package perl conflicts for:
bwa[version='>=0.7.17'] -> perl=5.22.0
pysam[version='>=0.13'] -> bcftools=1.9 -> perl
fseq -> perl=5.22.0
bowtie2[version='>=2.4.2'] -> perl
homer[version='>=4.11'] -> perl[version='>=5.26.2,<5.26.3.0a0']
pysam[version='>=0.13'] -> bcftools=1.9 -> texlive-core -> perl[version='5.20.3.*|5.20.3.1.*|5.22.2.1|>=5.26.2,<5.26.3.0a0']
fastqc[version='>=0.11.9'] -> perl
perl
Package python-dateutil conflicts for:
peppy[version='>=0.31.0'] -> pandas[version='>=0.24.2'] -> python-dateutil[version='>=2.5.*|>=2.6.1|>=2.7.3']
refgenie[version='>=0.9.3'] -> piper[version='>=0.12.1'] -> pandas -> python-dateutil[version='>=2.5.*|>=2.6.1|>=2.7.3']
pysam[version='>=0.13'] -> bcftools=1.9 -> matplotlib -> python-dateutil
piper[version='>=0.12.1'] -> pandas -> python-dateutil[version='>=2.5.*|>=2.6.1|>=2.7.3']
pandas[version='>=0.20.2'] -> python-dateutil[version='>=2.5.*|>=2.6.1|>=2.7.3']`
jpsmith5 commented 3 years ago

Hey @gbloeb,

I am looking into this right now and will let you know what the solution is as quickly as I can here.

jpsmith5 commented 3 years ago

Hi @gbloeb, I just pushed an updated conda environment file that in testing on multiple systems is working in my hands. Give that a go and let me know if you hit any issues.