R.utils not in requirements

databio / pepatac

A modular, containerized pipeline for ATAC-seq data processing

http://pepatac.databio.org

BSD 2-Clause "Simplified" License

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R.utils not in requirements #229

Open nsheff opened 2 years ago

nsheff commented 2 years ago

Following #228 ...

Calculating mm10 peak counts for 10 samples...
peakCounts() peak coverage file fread(): Error in FUN(X[[i]], ...): To read gz and bz2 files directly, fread() requires 'R.utils' package which cannot be found. Please install 'R.utils' using 'install.packages('R.utils')'.

kloot commented 2 years ago

encountered by me too.

Suncuss commented 1 year ago

similar issue when running within docker image 0.10.1