Open unikill066 opened 1 year ago
I am trying to install PEPATAC in conda environment and I get the following error in step 2.
conda 23.1.0
conda env create -f requirements-condo.yml
Retrieving notices: ...working... done Collecting package metadata (repodata.json): done Solving environment: failed ResolvePackageNotFound: - xorg-libxdmcp==1.1.3=h7f98852_0 - python-levenshtein==0.12.2=py39h3811e60_0 - grep==3.4=h9d02d08_1 - r-htmltools==0.5.2=r41h03ef668_0 - bedtools==2.30.0=h7d7f7ad_2 - pluggy==1.0.0=py39hf3d152e_1 - r-covr==3.5.1=r41h03ef668_0 - r-xml==3.99_0.8=r41hcfec24a_0 - libblas==3.9.0=12_linux64_openblas - libgcc-devel_linux-64==9.4.0=hd854feb_11 - bioconductor-delayedarray==0.18.0=r41hd029910_0 - libgomp==11.2.0=h1d223b6_11 - binutils_linux-64==2.36=hf3e587d_1 - homer==4.11=pl5262h7d875b9_5 - r-mass==7.3_54=r41hcfec24a_0 - libpng==1.6.37=h21135ba_2 - r-processx==3.5.2=r41hcfec24a_0 - r-openssl==1.4.5=r41he36bf35_1 - r-xfun==0.27=r41h03ef668_0 - icu==68.2=h9c3ff4c_0 - importlib-metadata==4.8.1=py39hf3d152e_0 - libgcc-ng==11.2.0=h1d223b6_11 - tk==8.6.11=h27826a3_1 - giflib==5.2.1=h36c2ea0_2 - wget==1.20.3=ha56f1ee_1 - jbig==2.1=h7f98852_2003 - r-nlme==3.1_153=r41h859d828_0 - libtiff==4.3.0=hf544144_1 - pcre2==10.37=h032f7d1_0 - r-xml2==1.3.2=r41h03ef668_1 - python==3.9.7=hb7a2778_3_cpython - pathlib2==2.3.6=py39hf3d152e_0 - ucsc-bigwigmerge==377=h0b8a92a_2 - r-later==1.2.0=r41h03ef668_0 - ucsc-wigtobigwig==377=h0b8a92a_2 - bioconductor-zlibbioc==1.38.0=r41hd029910_0 - bioconductor-rsamtools==2.8.0=r41h399db7b_0 - cffi==1.14.6=py39h4bc2ebd_1 - r-restfulr==0.0.13=r41hdf9a8c9_1 - r-glue==1.4.2=r41hcfec24a_0 - cairo==1.16.0=h6cf1ce9_1008 - libunistring==0.9.10=h7f98852_0 - bioconductor-xvector==0.32.0=r41hd029910_0 - libcurl==7.79.1=h2574ce0_1 - xorg-renderproto==0.11.1=h7f98852_1002 - krb5==1.19.2=hcc1bbae_2 - xorg-inputproto==2.3.2=h7f98852_1002 - r-git2r==0.28.0=r41hf628c3e_1 - r-yaml==2.2.1=r41hcfec24a_1 - r-kernsmooth==2.23_20=r41h742201e_0 - zstd==1.5.0=ha95c52a_0 - pigz==2.6=h27826a3_0 - zlib==1.2.11=h36c2ea0_1013 - unzip==6.0=h7f98852_2 - genrich==0.6.1=h5bf99c6_1 - gxx_impl_linux-64==9.4.0=h03d3576_11 - bwa==0.7.17=h5bf99c6_8 - r-bitops==1.0_7=r41hcfec24a_0 - freetype==2.10.4=h0708190_1 - r-digest==0.6.28=r41h03ef668_0 - r-askpass==1.1=r41hcfec24a_2 - openjdk==11.0.9.1=h5cc2fde_1 - r-data.table==1.14.2=r41hcfec24a_0 - rich==10.12.0=py39hf3d152e_0 - bioconductor-s4vectors==0.30.0=r41hd029910_0 - r-matrixstats==0.61.0=r41hcfec24a_0 - fribidi==1.0.10=h36c2ea0_0 - ucsc-bedtobigbed==377=h0b8a92a_2 - openblas==0.3.18=pthreads_h4748800_0 - libstdcxx-devel_linux-64==9.4.0=hd854feb_11 - tktable==2.10=hb7b940f_3 - samtools==1.14=hb421002_0 - xorg-fixesproto==5.0=h7f98852_1002 - r-fastmap==1.1.0=r41h03ef668_0 - libev==4.33=h516909a_1 - libdeflate==1.7=h7f98852_5 - libstdcxx-ng==11.2.0=he4da1e4_11 - r-rcurl==1.98_1.5=r41hcfec24a_0 - yaml==0.2.5=h516909a_0 - libffi==3.4.2=h9c3ff4c_4 - r-jsonlite==1.7.2=r41hcfec24a_0 - gfortran_impl_linux-64==9.4.0=h0003116_11 - r-mgcv==1.8_38=r41he454529_0 - libxcb==1.13=h7f98852_1003 - r-base64enc==0.1_3=r41hcfec24a_1004 - r-cachem==1.0.6=r41hcfec24a_0 - r-ellipsis==0.3.2=r41hcfec24a_0 - libxml2==2.9.12=h72842e0_0 - r-utf8==1.2.2=r41hcfec24a_0 - xorg-libxfixes==5.0.3=h7f98852_1004 - r-gert==1.4.1=r41h29657ab_1 - r-backports==1.3.0=r41hcfec24a_0 - r-purrr==0.3.4=r41hcfec24a_1 - preseq==2.0.3=hc216eb9_5 - liblapack==3.9.0=12_linux64_openblas - bioconductor-genomicalignments==1.28.0=r41hd029910_0 - r-colorspace==2.0_2=r41hcfec24a_0 - r-lattice==0.20_45=r41hcfec24a_0 - xorg-libice==1.0.10=h7f98852_0 - r-cli==3.1.0=r41h03ef668_0 - r-gtools==3.9.2=r41hcfec24a_0 - _openmp_mutex==4.5=1_gnu - ncurses==6.2=h58526e2_4 - libgit2==1.3.0=hee63804_1 - samblaster==0.1.26=h7d875b9_1 - r-lazyeval==0.2.2=r41hcfec24a_2 - ucsc-bedgraphtobigwig==377=h0b8a92a_2 - xorg-xextproto==7.3.0=h7f98852_1002 - sqlite==3.36.0=h9cd32fc_2 - jpeg==9d=h36c2ea0_0 - r-farver==2.1.0=r41h03ef668_0 - libiconv==1.16=h516909a_0 - gcc_impl_linux-64==9.4.0=h03d3576_11 - gettext==0.19.8.1=h73d1719_1008 - bioconductor-biocparallel==1.26.0=r41h399db7b_0 - lerc==2.2.1=h9c3ff4c_0 - r-sys==3.4=r41hcfec24a_0 - ld_impl_linux-64==2.36.1=hea4e1c9_2 - r-catools==1.18.2=r41h03ef668_0 - xorg-libxau==1.0.9=h7f98852_0 - r-dplyr==1.0.7=r41h03ef668_0 - future==0.18.2=py39hf3d152e_3 - libwebp-base==1.2.1=h7f98852_0 - xorg-libxext==1.3.4=h7f98852_1 - markupsafe==2.0.1=py39h3811e60_0 - r-fs==1.5.0=r41h03ef668_0 - skewer==0.2.2=hc9558a2_3 - r-rcpp==1.0.7=r41h03ef668_0 - harfbuzz==2.9.1=h83ec7ef_1 - r-sourcetools==0.1.7=r41h9c3ff4c_1002 - fontconfig==2.13.1=hba837de_1005 - c-ares==1.18.1=h7f98852_0 - r-mime==0.12=r41hcfec24a_0 - r-curl==4.3.2=r41hcfec24a_0 - xorg-libxrender==0.9.10=h7f98852_1003 - coreutils==8.31=h516909a_0 - r-vctrs==0.3.8=r41hcfec24a_1 - bioconductor-biostrings==2.60.0=r41hd029910_0 - bioconductor-rhtslib==1.24.0=r41hd029910_0 - ca-certificates==2021.10.8=ha878542_0 - macs2==2.2.7.1=py39h38f01e4_3 - r-rsqlite==2.2.8=r41h03ef668_0 - tbb==2020.2=h4bd325d_4 - binutils_impl_linux-64==2.36.1=h193b22a_2 - lcms2==2.12=hddcbb42_0 - r-ps==1.6.0=r41hcfec24a_0 - psutil==5.8.0=py39h3811e60_1 - sed==4.8=he412f7d_0 - r-matrix==1.3_4=r41he454529_0 - numpy==1.21.3=py39hdbf815f_0 - r-isoband==0.2.5=r41h03ef668_0 - r-rlang==0.4.12=r41hcfec24a_0 - ucsc-bigwigcat==377=h0b8a92a_2 - bwidget==1.9.14=ha770c72_1 - libnghttp2==1.43.0=h812cca2_1 - htslib==1.14=h9093b5e_0 - r-magrittr==2.0.1=r41hcfec24a_1 - xz==5.2.5=h516909a_1 - curl==7.79.1=h2574ce0_1 - xorg-libxi==1.7.10=h7f98852_0 - r-testthat==3.1.0=r41h03ef668_0 - libssh2==1.10.0=ha56f1ee_2 - libuuid==2.32.1=h7f98852_1000 - gsl==2.6=he838d99_2 - gawk==5.1.0=h7f98852_0 - brotlipy==0.7.0=py39h3811e60_1001 - bioconductor-genomicranges==1.44.0=r41hd029910_0 - bioconductor-iranges==2.26.0=r41hd029910_0 - r-sass==0.4.0=r41h03ef668_0 - r-promises==1.2.0.1=r41h03ef668_0 - pthread-stubs==0.4=h36c2ea0_1001 - xorg-libx11==1.7.2=h7f98852_0 - xorg-libsm==1.2.3=hd9c2040_1000 - libcblas==3.9.0=12_linux64_openblas - r-stringi==1.7.5=r41hcabe038_0 - r-fansi==0.4.2=r41hcfec24a_0 - r-httpuv==1.6.3=r41h03ef668_0 - r-base==4.1.1=hb67fd72_0 - r-rjson==0.2.20=r41h03ef668_1002 - _libgcc_mutex==0.1=conda_forge - rust==1.56.0=h61edd41_0 - gfortran_linux-64==9.4.0=hf0ab688_1 - pysocks==1.7.1=py39hf3d152e_3 - coverage==6.1.1=py39h3811e60_0 - r-tidyselect==1.1.1=r41hc72bb7e_0 - r-diffobj==0.3.5=r41hcfec24a_0 - bioconductor-biobase==2.52.0=r41hd029910_0 - libzlib==1.2.11=h36c2ea0_1013 - r-markdown==1.1=r41hcfec24a_1 - xorg-recordproto==1.14.2=h7f98852_1002 - r-bit64==4.0.5=r41hcfec24a_0 - perl==5.26.2=h36c2ea0_1008 - libgfortran5==11.2.0=h5c6108e_11 - graphite2==1.3.13=h58526e2_1001 - r-png==0.1_7=r41hcfec24a_1004 - gcc_linux-64==9.4.0=h391b98a_1 - r-tibble==3.1.5=r41hcfec24a_0 - libglib==2.70.0=h174f98d_1 - r-rappdirs==0.3.3=r41hcfec24a_0 - libopenblas==0.3.18=pthreads_h8fe5266_0 - bioconductor-rtracklayer==1.52.0=r41hd029910_0 - libedit==3.1.20191231=he28a2e2_2 - libsanitizer==9.4.0=h79bfe98_11 - xorg-libxt==1.2.1=h7f98852_2 - pcre==8.45=h9c3ff4c_0 - bzip2==1.0.8=h7f98852_4 - openssl==1.1.1l=h7f98852_0 - r-filelock==1.0.2=r41hcfec24a_1002 - pango==1.48.10=hb8ff022_1 - xorg-kbproto==1.0.7=h7f98852_1002 - cykhash==1.0.2=py39hf149a3a_2 - xorg-xproto==7.0.31=h7f98852_1007 - lz4-c==1.9.3=h9c3ff4c_1 - libidn2==2.3.2=h7f98852_0 - mysql-connector-c==6.1.11=h6eb9d5d_1007 - cython==0.29.24=py39he80948d_0 - gxx_linux-64==9.4.0=h0316aca_1 - libgfortran-ng==11.2.0=h69a702a_11 - r-pkgload==1.2.3=r41h03ef668_0 - alsa-lib==1.2.3=h516909a_0 - pytest==6.2.5=py39hf3d152e_0 - make==4.3=hd18ef5c_1 - xorg-libxtst==1.2.3=h7f98852_1002 - r-brio==1.1.2=r41hcfec24a_0 - cryptography==35.0.0=py39h95dcef6_1 - r-commonmark==1.7=r41hcfec24a_1002 - readline==8.1=h46c0cb4_0 - pixman==0.40.0=h36c2ea0_0 - chardet==4.0.0=py39hf3d152e_1 - r-roxygen2==7.1.2=r41h03ef668_0 - bowtie2==2.4.2=py39hc9c6fcd_2 - r-bit==4.0.4=r41hcfec24a_0 - r-zip==2.2.0=r41hcfec24a_0
I am trying to install PEPATAC in conda environment and I get the following error in step 2.
Version:
conda 23.1.0Command:
Error: