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databio / pepatac

A modular, containerized pipeline for ATAC-seq data processing
http://pepatac.databio.org
BSD 2-Clause "Simplified" License
54 stars 15 forks source link

looper bug. I change looper version from 1.4.3 to 1.3.0. How can I debug? Please help, thanks!!!! #248

Closed Conskier closed 1 month ago

Conskier commented 1 year ago

$ databio/pepatac|~/project/pepatac_tutorial/tools/pepatac$ looper run examples/tutorial/tutorial_refgenie.yaml Traceback (most recent call last): File "/home/data/t080402/.local/bin/looper", line 5, in from looper.main import main File "/home/data/t080402/.local/lib/python3.8/site-packages/looper/init.py", line 13, in from .conductor import SubmissionConductor File "/home/data/t080402/.local/lib/python3.8/site-packages/looper/conductor.py", line 15, in from eido import read_schema, validate_inputs ImportError: cannot import name 'validate_inputs' from 'eido' (/home/data/t080402/.local/lib/python3.8/site-packages/eido/init.py)

donaldcampbelljr commented 10 months ago

Hello,

Did you solve your issue? We've since released newer versions of PEPATAC, Looper, and Pipestat within the last month that may work better for you.

nsheff commented 1 month ago

This was likely solved in an update to the eido package, but please comment on this issue again or open a new issue if you find a similar problem