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datajoint / workflow-miniscope

Example DataJoint workflow for miniscope calcium imaging analysis with CaImAn
https://datajoint.com/docs
MIT License
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update __init__.py #9

Closed davidgodinez closed 3 years ago

davidgodinez commented 3 years ago

Modifying init.py to work with workflow-miniscope.

kabilar commented 3 years ago

Under testdata_paths(), please replace

'scanimage_2d': 'subject1/20200609_171646',

with

'miniscope_2d': 'subject1/20200609_171646',

and remove 

'scanimage_3d': 'subject2/20200420_1843959',
kabilar commented 3 years ago

Please replace

run tests: pytest -sv --cov-report term-missing --cov=workflow-calcium-imaging -p no:warnings

with

run tests: pytest -sv --cov-report term-missing --cov=workflow-miniscope -p no:warnings
kabilar commented 3 years ago

Please update the pull request title to reflect all of the changes committed.

davidgodinez commented 3 years ago

This PR will be closed but remade to kabilar/workflow-miniscope