Open tombisho opened 2 years ago
Thanks, I will certainly make use of that 😀
Maybe my question should have been, is this the correct home for a survival analysis image, rather than one that is in a "demo" repo?
dsSurvival package is not in the official Datashield's Github. You should build and publish your own image, using this example. If you do so, I'll use it in opal-demo.obiba.org in place of this demo one.
I was wondering what is the plan if an docker image is needed which contains both dsMediation, dsExposome and dsSurvival? Do we need a Community Docker Hub account?
We can't do all combinations, then it is up to the consortium to make their own images. And they would probably use a private docker repo, just like Inesctec does with Coral for Recap.
Yes although it might be nice for consortia to share to reduce work?
On Thu, 16 Jun 2022, 17:15 Yannick Marcon, @.***> wrote:
We can't do all combinations, then it is up to the consortium to make their own images. And they would probably use a private docker repo, just like Inesctec does with Coral for Recap.
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And yes I can see that I should create my image in the Github where the package has been created...
You could have the Dockerfile
within your R package source repo, for user reference. Just declare it in a .Rbuildignore
file so that it does not get packaged.
Yes that sounds like a good idea.
And then if I build an image, can it live in the DataSHIELD docker hub account (like for omics and exposome)? Or is this where we need some kind of audit?
On Thu, 16 Jun 2022, 19:55 Yannick Marcon, @.***> wrote:
You could have the Dockerfile within your R package source repo, for user reference. Just declare it in a .Rbuildignore file so that it does not get packaged.
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omics and exposome should be in https://hub.docker.com/u/brgelab space. You should have your own as well.
Ok great - I'll do that
On Fri, 17 Jun 2022, 10:54 Yannick Marcon, @.***> wrote:
omics and exposome should be in https://hub.docker.com/u/brgelab space. You should have your own as well.
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dsSurvival is in new profile "dolomite-beach"
Is this the repo I should use to create a Rock image for survival analysis?