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dauparas / ProteinMPNN

Code for the ProteinMPNN paper
MIT License
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Homooligimer while also fixing residues #32

Open inthesomeday000 opened 1 year ago

inthesomeday000 commented 1 year ago

Is it possible to fix positions while using the homooligimer example?

cvyaru commented 1 year ago

Is it expected to be a difference in the behavior between "fixed_positions" and "design_only_positions" when complementary sets of positions are defined in one case and the other, i.e. form a set {1 2 3 4 5} fixing {1 2} or designing_only {3 4 5} is it expected to be the same?

I am trying to build a consistent test but the option "design_only_positions" seems to be the one behaving as expected to me. Any other rexperiences?